PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0071ss00390.1

Common Name

LR48_Vigan346s000100

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NF-YA

Protein Properties

Length: 338aa MW: 36764 Da PI: 9.7572

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0071ss00390.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.4	2e-32	183	239	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq Rakle+++kl +k+rkpylheSRh hAl+R+RgsgGrF Vang0071ss00390.1 183 EEPIFVNAKQYHAILRRRQYRAKLESQNKL-IKERKPYLHESRHLHALKRARGSGGRF 239 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.2E-37	181	242	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.674	182	242	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.2E-26	184	239	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.1E-23	185	207	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	187	207	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.1E-23	216	239	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MKNLNEKGSG STHLTAPYAL GCSSWGASSE SDVQQSSMSR GLTLKMGVLP QQGRKTKPLN 60 FHYQDRDSSS SQSTGQSYPE VGSAQSGQFS VQCSNSSACS TLNTAGRKSI EGVIRSSVRG 120 QDFTLPPSQM CHNQPLAHTA FHLAEPCFSG LLASPYGPQP NIHPAQLIGM PTARILLPLD 180 LSEEPIFVNA KQYHAILRRR QYRAKLESQN KLIKERKPYL HESRHLHALK RARGSGGRFL 240 NTKKHEESKP TSQNHDIDVS RCTHLNLRGN MSESKARQLN YRDGASTATC SDISSASNSG 300 DLFQQHQPDI RLCGYPSHIG RNMQGYSADI SGGGGGGG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-21	183	254	2	71	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0071ss00390.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017407041.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-3-like
Refseq	XP_017407042.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-3-like
Refseq	XP_017407043.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-3-like
Refseq	XP_017407044.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-3-like
TrEMBL	A0A0L9TA00	0.0	A0A0L9TA00_PHAAN; Uncharacterized protein
STRING	XP_007135485.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10120	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	5e-60	nuclear factor Y, subunit A3

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]