PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0070s00450.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 28109.7 Da    PI: 7.0107
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0070s00450.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81e-31959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Vang0070s00450.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                      79***********************************************96 PP
2K-box87.42.7e-29801746100
             K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                         ++ e ++++ +qe+ kLk+++e Lq++qR+llGe+Le L++keL+qLe+qL++slk+iRs K++ +l+q+++l +ke++l e+n  Lr+kl
  Vang0070s00450.1  80 LHHQPEIETQRRYQEYLKLKSKVEALQQTQRNLLGEELEHLDVKELEQLERQLDSSLKQIRSNKTQQMLDQLSDLHRKEEMLLETNSILRNKL 172
                       556678899***********************************************************************************9 PP

             K-box  99 ee 100
                       ee
  Vang0070s00450.1 173 EE 174
                       87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.179161IPR002100Transcription factor, MADS-box
CDDcd002657.31E-46278No hitNo description
SuperFamilySSF554557.33E-34283IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-333859IPR002100Transcription factor, MADS-box
PfamPF014862.2E-2587172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.888178IPR002487Transcription factor, K-box
Gene3DG3DSA:3.10.450.503.2E-4117234IPR032710NTF2-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSG  60
PSMAKTLERY HRCSYGALEL HHQPEIETQR RYQEYLKLKS KVEALQQTQR NLLGEELEHL  120
DVKELEQLER QLDSSLKQIR SNKTQQMLDQ LSDLHRKEEM LLETNSILRN KLEEINVALQ  180
PTWETREQTA PYDGHPHPSE GYYDTAHCNS TLRIGYDSSG LNEAGGAAGT SAQNASEFMH  240
GWMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-269317222101Developmental protein SEPALLATA 3
4ox0_B2e-269317222101Developmental protein SEPALLATA 3
4ox0_C2e-269317222101Developmental protein SEPALLATA 3
4ox0_D2e-269317222101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0070s00450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150433e-98AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017426583.10.0PREDICTED: MADS-box protein CMB1-like
SwissprotQ8LLR21e-107MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A0S3T2P30.0A0A0S3T2P3_PHAAN; Uncharacterized protein
STRINGGLYMA02G13401.11e-170(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.14e-95MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]