PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang0070s00380.1 | ||||||||
Common Name | LR48_Vigan06g113700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 243aa MW: 28111 Da PI: 9.069 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96 | 1.6e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+ey++ Vang0070s00380.1 9 KRIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVALIVFSHKGKLFEYAT 59 79***********************************************86 PP | |||||||
2 | K-box | 104.7 | 1.2e-34 | 75 | 174 | 1 | 100 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 y++++ ++++++++ +++ e+++Lk++i+ Lqr+ Rh++GedL s+slkeLq+LeqqL++slk+iR+++n+l++e+i+elqkkek++qe+n Vang0070s00380.1 75 YAERQLVANDSETQGNWTIEYTRLKAKIDLLQRNYRHYMGEDLASMSLKELQSLEQQLDTSLKNIRNRRNDLMYESISELQKKEKRIQEQNSI 167 567778888899999****************************************************************************** PP K-box 94 Lrkklee 100 L kk++e Vang0070s00380.1 168 LAKKIKE 174 ****987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.268 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.9E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.45E-33 | 2 | 92 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.80E-40 | 2 | 79 | No hit | No description |
PRINTS | PR00404 | 3.0E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.6E-29 | 85 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.705 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 243 aa Download sequence Send to blast |
MGRGRVQLKR IENKINRQVT FSKRRGGLLK KAHEISVLCD AEVALIVFSH KGKLFEYATD 60 SCMEKILERH ERYAYAERQL VANDSETQGN WTIEYTRLKA KIDLLQRNYR HYMGEDLASM 120 SLKELQSLEQ QLDTSLKNIR NRRNDLMYES ISELQKKEKR IQEQNSILAK KIKEKEQAVA 180 QHAVQWEQPN YRVDTSFLPQ QQPLPSLNIG GNNFNQDAAP ELGRNGLDLT LEPLYSCHLG 240 CF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-21 | 1 | 73 | 1 | 72 | MEF2C |
5f28_B | 4e-21 | 1 | 73 | 1 | 72 | MEF2C |
5f28_C | 4e-21 | 1 | 73 | 1 | 72 | MEF2C |
5f28_D | 4e-21 | 1 | 73 | 1 | 72 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00096 | ChIP-seq | Transfer from AT1G69120 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang0070s00380.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT095362 | 0.0 | BT095362.1 Soybean clone JCVI-FLGm-14L12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014522264.1 | 0.0 | truncated transcription factor CAULIFLOWER A-like | ||||
Refseq | XP_017426838.1 | 0.0 | PREDICTED: truncated transcription factor CAULIFLOWER A | ||||
Swissprot | Q6E6S7 | 1e-123 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | A0A0L9USX7 | 1e-180 | A0A0L9USX7_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T2D1 | 1e-180 | A0A0S3T2D1_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A1S3VW23 | 1e-180 | A0A1S3VW23_VIGRR; truncated transcription factor CAULIFLOWER A-like | ||||
STRING | XP_007153481.1 | 1e-165 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF588 | 32 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69120.1 | 1e-106 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|