PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0070s00170.1 | ||||||||
Common Name | LR48_Vigan06g110500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | CO-like | ||||||||
Protein Properties | Length: 289aa MW: 32508.2 Da PI: 10.4681 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 27 | 9e-09 | 10 | 53 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 +r C+ + +++++++C ++ +lC+ C ++ H+ H+v Vang0070s00170.1 10 ARACDGCIRNRARWYCAADDAFLCQACDSSVHSAnplarrhHRV 53 578*****************************668888886655 PP | |||||||
2 | CCT | 65.1 | 2e-22 | 231 | 274 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKr++R+F+Kk+rYe+RK +Ae+RpR+KGrFvk++ Vang0070s00170.1 231 REARVLRYREKRRKRLFSKKVRYEVRKMNAEKRPRMKGRFVKRS 274 9****************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.6E-9 | 8 | 55 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.48 | 8 | 55 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.4E-6 | 11 | 53 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.05E-9 | 11 | 55 | No hit | No description |
Pfam | PF06203 | 5.7E-17 | 231 | 273 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.013 | 231 | 273 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MGKTVGAKTA RACDGCIRNR ARWYCAADDA FLCQACDSSV HSANPLARRH HRVRLKIISH 60 INSGNDLSSG MSNIRVPSWH KGFTKKPRTP RHGRHTNKGV KSPFNVVPEV CPQDTISNSR 120 EESTDQLLYR VPATPSSEQG VSMTDERKVV FLGCESAIEI AEFSADLDYE AVISAWTTQK 180 SPWTTGAKPN LGTQQFFWPH FMGTCGVEFC HLRGELGELS GCHSTMGDDG REARVLRYRE 240 KRRKRLFSKK VRYEVRKMNA EKRPRMKGRF VKRSCIATPP TVPLLNRK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0070s00170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017426919.1 | 1e-118 | PREDICTED: zinc finger protein CONSTANS-LIKE 16-like | ||||
TrEMBL | A0A0L9UTB7 | 1e-117 | A0A0L9UTB7_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T2G1 | 1e-117 | A0A0S3T2G1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007153446.1 | 1e-79 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1473 | 33 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 8e-39 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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