PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0069ss02080.1

Common Name

LR48_Vigan406s024200

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 454aa MW: 49562.1 Da PI: 5.9545

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0069ss02080.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.3	2.4e-07	367	407	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P K++ a++L +A +Y+k L Vang0069ss02080.1 367 ARHRRERISERIRVLQKLVPGG-----SKMDTASMLDEAANYLKFL 407 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.964	358	407	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-13	363	417	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-12	364	413	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-11	364	415	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-4	368	407	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.74E-5	380	412	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MDGLSWDTSQ LEANTPILWS TIQPPPDFEG GYSMPNVVNQ IQDLQKAQTG LAHSDSERVI 60 YQSADATTAS SEIMDVMQRQ NTNLLQHAPT MMPVKSGTGA SWGEAFTSQS YPSLSVNGPQ 120 RMNLISNYMP DFSMAHQQQQ QQQLVNGSQN GKGACSLESF DCLISATNSS TDTSVEDDSI 180 SMILSDCRNL WNFSYGSAAS TGESESNASN GRKEDKRCPV KEVDETVSQS SLDRGKTVQS 240 KANCSKRSHE ETGMIKVGAT GSGSCFSIVQ NSSSVEEGGF RLISDDPSKS KKPRWEKSSS 300 SNNINFQQPN SSMSSSIEEP DPEAIAQMKE MIYRAAAFRP VNFGLDAAEK PKRKNVRIST 360 DPQTVAARHR RERISERIRV LQKLVPGGSK MDTASMLDEA ANYLKFLRSQ VKALECLGNK 420 VEAMNCPPTS IAFSFNPSFP MQTSLSQIHH SQG*

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MDGLSWDTSQ LEANTPILWS TIQPPPDFEG GYSMPNVVNQ IQDLQKAQTG LAHSDSERVI  60
YQSADATTAS SEIMDVMQRQ NTNLLQHAPT MMPVKSGTGA SWGEAFTSQS YPSLSVNGPQ  120
RMNLISNYMP DFSMAHQQQQ QQQLVNGSQN GKGACSLESF DCLISATNSS TDTSVEDDSI  180
SMILSDCRNL WNFSYGSAAS TGESESNASN GRKEDKRCPV KEVDETVSQS SLDRGKTVQS  240
KANCSKRSHE ETGMIKVGAT GSGSCFSIVQ NSSSVEEGGF RLISDDPSKS KKPRWEKSSS  300
SNNINFQQPN SSMSSSIEEP DPEAIAQMKE MIYRAAAFRP VNFGLDAAEK PKRKNVRIST  360
DPQTVAARHR RERISERIRV LQKLVPGGSK MDTASMLDEA ANYLKFLRSQ VKALECLGNK  420
VEAMNCPPTS IAFSFNPSFP MQTSLSQIHH SQG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0069ss02080.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	0.0	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017407362.1	0.0	PREDICTED: transcription factor bHLH87-like
Swissprot	Q8S3D2	3e-87	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A0L9TA31	0.0	A0A0L9TA31_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3T0S1	0.0	A0A0S3T0S1_PHAAN; Uncharacterized protein
STRING	XP_007135604.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4530	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	3e-76	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]