PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0069ss01680.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 229aa    MW: 25377.3 Da    PI: 6.0226
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0069ss01680.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.000271121501255
                        HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Vang0069ss01680.2 112 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 150
                        6667788999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.76100149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-7110156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-9111157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.12E-5112154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MMAGNPNWWT THPPSLIPPQ YVLGSSSIPF NSSTQNPDHE PPPSLSQLLF TGLPGEEERV  60
AFSHFQSKKL DEWNEHMLNP PPINPMVDVI KQEVSQSGSF YHQGHDQEFQ VRKEKLGDRI  120
TALHQLVSPF GKTDTASVLL EAIGYIRFLQ GQIEQQVHGE RNSVFPEDPG QLLNDNGLKR  180
KGAPNQDAKD KPKDLRSRGL CLVPVSCTQH VGNENGADYW APAYGSGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0069ss01680.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150424e-97AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014633138.11e-126transcription factor bHLH68 isoform X3
SwissprotQ8S3D12e-50BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A2Z6LJG64e-99A0A2Z6LJG6_TRISU; Uncharacterized protein
STRINGGLYMA07G02120.41e-74(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.18e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]