PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0069ss01560.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 629aa    MW: 70139.4 Da    PI: 6.8646
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0069ss01560.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox512.5e-164421856
                       HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       lF+++++p++++r++L+++lgL  rqVk+WFqNrR++ k
  Vang0069ss01560.1  4 LFKESPHPDEKQRQQLSQQLGLAPRQVKFWFQNRRTQIK 42
                       8**********************************9877 PP
2START1816.9e-571553672206
                        HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
              START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                        + ++a++el+k+a  +ep+Wv+s+    e++n+de++++f+ +++        +ea+r+s vv+m+l+ l++++ld++ qW+e+++    ka
  Vang0069ss01560.1 155 IVNRATEELIKMANMGEPLWVRSVetsrEILNYDEYVKEFAVKNSssdkpkTFIEASRDSEVVFMDLPHLLQTFLDVN-QWKEMFPclisKA 245
                        567999**********************************888779****99**************************.************* PP

                        EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS
              START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164
                        +t++vi++g      ga+qlm+aelq+l+p+vp R+++fvR+++ql++++w+i dvS+d  +++  ++s+ +++++pSg++ie+ksngh+k 
  Vang0069ss01560.1 246 ATVDVICNGegsnrnGAVQLMFAELQMLTPMVPtREVYFVRCCKQLSDEQWAIIDVSIDKVEHNI-DASLEKCRKRPSGCIIEDKSNGHCKS 336
                        ****************************************************************8.9***********************96 PP

                        EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                        t           +h l+r +v+sgla+ga++w  tlq qce+
  Vang0069ss01560.1 337 T-----------IHTLYRTIVNSGLAFGARHWITTLQLQCER 367
                        5...........79**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.127144IPR001356Homeobox domain
SMARTSM003899.0E-5148IPR001356Homeobox domain
PfamPF000461.1E-13342IPR001356Homeobox domain
SuperFamilySSF466895.43E-13449IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-14452IPR009057Homeodomain-like
CDDcd000869.66E-13542No hitNo description
PROSITE patternPS0002701942IPR017970Homeobox, conserved site
PROSITE profilePS5084829.21145370IPR002913START domain
SuperFamilySSF559611.29E-27147367No hitNo description
CDDcd088752.25E-97149366No hitNo description
SMARTSM002341.9E-58154367IPR002913START domain
PfamPF018523.6E-44155367IPR002913START domain
SuperFamilySSF559611.92E-11397617No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MLMLFKESPH PDEKQRQQLS QQLGLAPRQV KFWFQNRRTQ IKAIQERHEN SLLKTELDKL  60
KEENKAMREI IRKSCCPNCG MVTATIDASM SIEEKQLLIE NVKLKAEVEK LRATLGKCSP  120
TSPASSAGHD EEENRSSLDF YNGVFGLEKS RIMEIVNRAT EELIKMANMG EPLWVRSVET  180
SREILNYDEY VKEFAVKNSS SDKPKTFIEA SRDSEVVFMD LPHLLQTFLD VNQWKEMFPC  240
LISKAATVDV ICNGEGSNRN GAVQLMFAEL QMLTPMVPTR EVYFVRCCKQ LSDEQWAIID  300
VSIDKVEHNI DASLEKCRKR PSGCIIEDKS NGHCKSTIHT LYRTIVNSGL AFGARHWITT  360
LQLQCERLVF NMATNVPTKD STGVATLAGR KSILKLAQRM TWSFCHAIGA SSFHTWTKFT  420
SKTGEDIRIS SRKNLNDPGE PLGVILSAVS SVWLPVSPNA LFDFLRDEAR RSEWDMMSCG  480
GSVQSIANLA KGKGRGNAVN IHKIESTENS VWVLQDSCTS GYESMVAYAL VDFAGLQSVL  540
TGCDSSNLTI LPSGFSILPD GVEERPLVIR SKQDEKGTEG GSLFTMLLQM LVNASPTAKL  600
TMESVESATN LVSCTLRKIR TSLLCEDG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0069ss01560.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311640.0KT031164.1 Glycine max clone HN_CCL_123 homeodomain/HOMEOBOX transcription factor (Glyma07g02220.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017407449.10.0PREDICTED: homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A0S3SZW30.0A0A0S3SZW3_PHAAN; Uncharacterized protein
STRINGXP_007135673.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]