PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0069ss00620.1
Common NameLR48_Vigan406s007400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 320aa    MW: 35194 Da    PI: 9.465
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0069ss00620.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.5e-10136180554
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h + Er+RR+++ ++f  L   +P +     kK +Ka+iL +A+ Y+k L
  Vang0069ss00620.1 136 HIMTERKRRRELTERFIALSATIPGL-----KKIDKATILCEAITYVKRL 180
                        8999**********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.814131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-15135202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-15136196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.44E-9136185No hitNo description
PfamPF000101.5E-7136180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-9137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MHRPAFSSDS ETHSPKVQSK STYGGSDYTA LTSSKSSNLV MKTNSSNNFL FSSQLAPEKP  60
ATAISPTAYI LSFNDSTVVA ATCQTYDGKQ PYQEDAVAGS GGACLPSKGV SEKHEIEPKT  120
NSATRKGRSS AETLDHIMTE RKRRRELTER FIALSATIPG LKKIDKATIL CEAITYVKRL  180
KERVRELEEQ CKRTRVESVS FVHQRSNIIS TDKGTTSGAT KSDECYKTNE ALPTVEARVF  240
KKDVLIRIHC KIQHGILIKI LDYLNNLDLS TTSNSVMPFG SSTLDISIVA QMGEKFNATM  300
NDLVKNLRLV LLQSSEVQK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140144RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0069ss00620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014515222.10.0transcription factor bHLH18
TrEMBLA0A0L9TAW30.0A0A0L9TAW3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T0B20.0A0A0S3T0B2_PHAAN; Uncharacterized protein
STRINGGLYMA07G03051.11e-172(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1625679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.22e-29bHLH family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]