PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0069ss00470.1 | ||||||||
Common Name | LR48_Vigan406s006000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 260aa MW: 28921.2 Da PI: 8.0902 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.0002 | 103 | 125 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Vang0069ss00470.1 103 FSCNYCQRKFYSSQALGGHQNAH 125 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.5E-6 | 100 | 130 | No hit | No description |
PROSITE profile | PS50157 | 11.427 | 103 | 130 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 105 | 125 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MDLQRQEPCP SESLNMITFS DTMPCQRSSI DTQRKRNHTE SDDQKHPNDS NPRVLLDLSL 60 SNKDSGDDDE SKPELNLLNC FHTNFSENSS ESSQGNELDP RVFSCNYCQR KFYSSQALGG 120 HQNAHKRERT LARRGYKAGA ADFGHTYSTM PFLPSHGLYN KSLGIQVHAM INKPSHQAPI 180 FGLCRSNGWQ RQPLDSQPAI GNFRVGAESE SSLADSVPKV GKFSTRVVTE GFGGHCFGSF 240 AHLKSKQEKL QKLDLSLKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0069ss00470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017407462.1 | 0.0 | PREDICTED: zinc finger protein 3-like | ||||
TrEMBL | A0A0L9T9G1 | 0.0 | A0A0L9T9G1_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T114 | 0.0 | A0A0S3T114_PHAAN; Uncharacterized protein | ||||
STRING | XP_007135804.1 | 1e-169 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1439 | 31 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10970.1 | 2e-38 | C2H2 family protein |
Publications ? help Back to Top | |||
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