PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0065s00590.1
Common NameLR48_Vigan10g229400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 426aa    MW: 46844.4 Da    PI: 8.3162
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0065s00590.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY62.19.7e-20148187139
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEE CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkve 39 
                       ++Dg++WrKYGqK+ kg+++pr+YYrCt +  Cpv+k+v 
  Vang0065s00590.1 148 MNDGCQWRKYGQKMAKGNPCPRAYYRCTVSpLCPVRKQVR 187
                       58**************************998*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-19134187IPR003657WRKY domain
SuperFamilySSF1182909.94E-18141189IPR003657WRKY domain
PROSITE profilePS5081118.728143186IPR003657WRKY domain
SMARTSM007741.8E-17148212IPR003657WRKY domain
PfamPF031064.2E-17149188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MLKFLDILQE EKTEESANAK GVTSREESEE SELVSLSLGI SLKGKTKGER KHCKREDEGM  60
YKVLRLGLDI NLDPVDHVEA ANISSAANIS SAASSFGEGG KEEEPSEMWP PSKVLKAMKN  120
VDKSEASQND QPKKTRVSIR ARCDTQTMND GCQWRKYGQK MAKGNPCPRA YYRCTVSPLC  180
PVRKQVRLSL WLNGHGLVNS AISSITNFSA PNYNLDNALN FSTYHVSRPH QFYFPNSSIS  240
SLNSHPTITL DLTAPPTSSN LNFSSGFSPL QSSMSPSPWS SYSSYFNSGP LTHKRNHGDY  300
LLNTGHQNQP YLEHLHHPIC TSNNNFSQRS LPDSIIAATK AITSNPKFQS VLATALTTYV  360
GNEAGGVRLR ENHVLENAEL NLKLCSENTI GCASSRYLNV SSSALNPQQG NSSIFPLPSL  420
PEQWK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0065s00590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017410077.10.0PREDICTED: probable WRKY transcription factor 61
TrEMBLA0A0L9VNC20.0A0A0L9VNC2_PHAAN; Uncharacterized protein
STRINGXP_007157685.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.13e-33WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]