PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0065s00320.1 | ||||||||
Common Name | LR48_Vigan06g105600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 414aa MW: 46809.5 Da PI: 7.0624 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.3 | 1.2e-52 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 + pGfrFhPtdeelv +yLk+k++++++++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++ Vang0065s00320.1 15 MLPGFRFHPTDEELVGFYLKRKIQQRPFTI-ELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIY 106 579**************************9.89***************8888999************************************** PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ +++ +glkk+Lvfykgra kg+ktdW+mhe+rl Vang0065s00320.1 107 SSeGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 142 *956677***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.36E-58 | 14 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.298 | 15 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-25 | 17 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MEEINNDAEK LDEVMLPGFR FHPTDEELVG FYLKRKIQQR PFTIELIKQL DIYKYDPWDL 60 PKLATTGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG SKCIGLKKSL 120 VFYKGRAAKG VKTDWMMHEF RLPSLTDSLS PKYIDKNIPA NESWAICRIF KKTNSTAQRA 180 LSQSWVSSLP ETRTSDHIQT KEQNSTKFCS DISFTKKTTL ASHYCTNNYN DAQPLTPNSS 240 TTLCPLDVAS YKSIINPLLY KAFDHFPISN GDLSTSFLFS SPFETSSDGN TNANVSSMLL 300 NMSSSVVGDF NKTSEDNTNA TASFGGLQEH GYPLPFLREM QSTFGEQQYD NINALVKGPN 360 VNMPRVDDQE LETVRSIGFP FNIGDAWKSN LLWDTSSFPC DLSSTYSTTK CYT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-53 | 17 | 179 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-53 | 17 | 179 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-53 | 17 | 179 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-53 | 17 | 179 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-53 | 17 | 179 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-53 | 17 | 179 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0065s00320.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017427015.1 | 0.0 | PREDICTED: protein FEZ | ||||
Swissprot | Q9ZVH0 | 1e-109 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A0L9US95 | 0.0 | A0A0L9US95_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T2K7 | 0.0 | A0A0S3T2K7_PHAAN; Uncharacterized protein | ||||
STRING | XP_007157629.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2013 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 1e-111 | NAC family protein |
Publications ? help Back to Top | |||
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