PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0065s00150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 318aa MW: 35301.1 Da PI: 5.4771 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 35.5 | 2.2e-11 | 20 | 44 | 1 | 25 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 kprl+WtpeLH+rF+ea +qLGG++ Vang0065s00150.1 20 KPRLKWTPELHQRFIEATNQLGGAD 44 79*********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-10 | 18 | 48 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 4.9E-21 | 124 | 170 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MDLQNMQNQS MHFVLSTDAK PRLKWTPELH QRFIEATNQL GGADSESNSK ESYEGDGDSR 60 TYFVPPEEPF TGIHSPFKYR LGKSQQLDTS SDSKQEDYIE TKSSDGHCSR EISLGAQNQI 120 TENMQIAQAL QMQMEVQRKL YEQIEVQKHL KLRIEAQGKY LQSVLKKAQE ALAGYNSAPV 180 GIELTKAELS QLVTIINNAC PSSPISELTE TRGLSLSCGD RKRDRGTMCS LESSLTSSES 240 SGRKEEKQSM EEIEEFKSSN NASVELPLMG FHTENKASNT GSSNEASGRK RSAATKSNDE 300 NNKFLLLQVG NGTHWFG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0065s00150.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014628881.1 | 0.0 | myb family transcription factor PHL8 isoform X1 | ||||
TrEMBL | A0A445LMA1 | 1e-180 | A0A445LMA1_GLYSO; Myb family transcription factor PHL8 | ||||
STRING | XP_007157612.1 | 1e-171 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5218 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69580.1 | 3e-53 | G2-like family protein |