PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0064ss00600.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 345aa    MW: 38886.5 Da    PI: 6.9504
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0064ss00600.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.4e-12169215455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h ++Er+RR+++ ++f  L  l+P +     +K +Ka+iL  A+ ++k+Lq
  Vang0064ss00600.1 169 DHIIAERKRREKLSQRFIALSALVPGL-----QKTDKASILGDAISHLKQLQ 215
                        6999**********************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.586165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-16169233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-16169229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9170215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.03E-12170219No hitNo description
SMARTSM003539.3E-15171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEITSIRELP DMKEQEMMED PNLLRQWHLS SIDDPNLLPI AAAFGETFQQ HAFTYPDFNP  60
KASMETTLMD IERPTKHHKN ISWNPIKSSA QTSDAQYVSF PNLLSFMDSN HISSLGLVKA  120
NEEACPITNS TTSLDTFSQG ILGNHNYLFK ACQETKKIGR RSKISHPQDH IIAERKRREK  180
LSQRFIALSA LVPGLQKTDK ASILGDAISH LKQLQEKVKA LEEAQNMKKT VESVVIVKKS  240
QLSYDVNNSS EYDGPLFEET IPEIEARFCG RNVLIRVHCE KTKGVVEKTI HEIENLHLKV  300
TNSNAMAFGR CAIDMTVIAQ MDMEFCMGVK DVVRNLRSAF TSSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-14166218557Transcription factor MYC2
5gnj_B6e-14166218557Transcription factor MYC2
5gnj_E6e-14166218557Transcription factor MYC2
5gnj_F6e-14166218557Transcription factor MYC2
5gnj_G6e-14166218557Transcription factor MYC2
5gnj_I6e-14166218557Transcription factor MYC2
5gnj_M6e-14166218557Transcription factor MYC2
5gnj_N6e-14166218557Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173178ERKRRE
2174179RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0064ss00600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017415483.10.0PREDICTED: transcription factor NAI1-like
SwissprotQ9T0729e-54BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A0S3QZU50.0A0A0S3QZU5_PHAAN; Uncharacterized protein
STRINGXP_007159189.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-56bHLH family protein