PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0064ss00300.1
Common NameLR48_Vigan01g079300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 162aa    MW: 18817.7 Da    PI: 10.5099
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0064ss00300.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.74.7e-26959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       k+i+n s rqvtfskRr+g++KKA+ELS+LCda++a+i+fs t kl++y+s
  Vang0064ss00300.1  9 KKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATSKLFDYAS 59
                       68***********************************************86 PP
2K-box42.82.2e-15891601889
              K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                        +   + L+k++e   +e+R+l GedL+ L+l+eLq++e++L+++l+++ + K+e ++++i++l++k k+ q+
  Vang0064ss00300.1  89 SDSNDILRKKVEDKNHELRQLNGEDLQGLTLQELQKIEENLKRGLTNVSKVKDEKVMQEISNLKRKVKSYQN 160
                        445567999999999****************************************************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.469161IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.24E-30281IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002652.25E-35377No hitNo description
PRINTSPR004041.3E-25323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.07285161IPR002487Transcription factor, K-box
PfamPF014864.3E-1393159IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MTRKRIQIKK IDNISSRQVT FSKRRKGLFK KAQELSTLCD ADIALIVFSA TSKLFDYASS  60
SMQQVIERRD RHSAMHRLDR PSMELQIESD SNDILRKKVE DKNHELRQLN GEDLQGLTLQ  120
ELQKIEENLK RGLTNVSKVK DEKVMQEISN LKRKVKSYQN L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-21176176MEF2C
5f28_B3e-21176176MEF2C
5f28_C3e-21176176MEF2C
5f28_D3e-21176176MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0064ss00300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0993380.0BT099338.1 Soybean clone JCVI-FLGm-13P11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017440451.11e-107PREDICTED: MADS-box protein JOINTLESS-like
SwissprotQ9FUY64e-59JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A0L9TKX11e-105A0A0L9TKX1_PHAAN; Uncharacterized protein
STRINGGLYMA08G07260.34e-94(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-58MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]