PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0064ss00240.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 80aa MW: 9218.58 Da PI: 10.2181 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 62.7 | 1.2e-19 | 2 | 77 | 55 | 127 |
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyr 127 +ke yfF kr +ky+++ +r+t s +Wkat dk+++s+ ++ + lkktLv+y+g++ kg+k W+mhe + Vang0064ss00240.2 2 QKEGYFFYKRGRKYRNSISLKRVTGSEFWKATSIDKPLYSQggeGNDCIRLKKTLVYYRGSTGKGTKNYWMMHELT 77 5788************************************96655555*************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 21.847 | 1 | 79 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.31E-17 | 2 | 76 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-6 | 6 | 76 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 80 aa Download sequence Send to blast |
GQKEGYFFYK RGRKYRNSIS LKRVTGSEFW KATSIDKPLY SQGGEGNDCI RLKKTLVYYR 60 GSTGKGTKNY WMMHELTCC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-15 | 1 | 75 | 69 | 139 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-15 | 1 | 75 | 69 | 139 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-15 | 1 | 75 | 69 | 139 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-15 | 1 | 75 | 69 | 139 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-15 | 1 | 75 | 72 | 142 | NAC domain-containing protein 19 |
3swm_B | 8e-15 | 1 | 75 | 72 | 142 | NAC domain-containing protein 19 |
3swm_C | 8e-15 | 1 | 75 | 72 | 142 | NAC domain-containing protein 19 |
3swm_D | 8e-15 | 1 | 75 | 72 | 142 | NAC domain-containing protein 19 |
3swp_A | 8e-15 | 1 | 75 | 72 | 142 | NAC domain-containing protein 19 |
3swp_B | 8e-15 | 1 | 75 | 72 | 142 | NAC domain-containing protein 19 |
3swp_C | 8e-15 | 1 | 75 | 72 | 142 | NAC domain-containing protein 19 |
3swp_D | 8e-15 | 1 | 75 | 72 | 142 | NAC domain-containing protein 19 |
4dul_A | 8e-15 | 1 | 75 | 69 | 139 | NAC domain-containing protein 19 |
4dul_B | 8e-15 | 1 | 75 | 69 | 139 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0064ss00240.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 1e-131 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017424751.1 | 1e-36 | PREDICTED: transcription factor JUNGBRUNNEN 1 | ||||
Swissprot | Q9SK55 | 1e-26 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A0L9UIA7 | 3e-35 | A0A0L9UIA7_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SKB6 | 3e-35 | A0A0S3SKB6_PHAAN; Uncharacterized protein | ||||
STRING | XP_007149303.1 | 9e-35 | (Phaseolus vulgaris) | ||||
STRING | cassava4.1_024488m | 7e-35 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 5e-29 | NAC domain containing protein 42 |