PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0063ss00900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 102aa    MW: 11709.1 Da    PI: 10.0395
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0063ss00900.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.35e-2297353118
                NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgek 118
                        +e++ewyfFs++d++y++g+r+n  t +g+Wk+tg+dk+++s k+  +g++ktLvfyk++ap+g++
  Vang0063ss00900.1   9 EEHNEWYFFSHKDNNYPRGTRTNTPTVAGFWKETGRDKAIYS-KHDSIGMRKTLVFYKAQAPNGQN 73 
                        3567**************************************.8889****************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.1551101IPR003441NAC domain
SuperFamilySSF1019412.09E-19972IPR003441NAC domain
PfamPF023654.6E-91370IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MESSRIGTEE HNEWYFFSHK DNNYPRGTRT NTPTVAGFWK ETGRDKAIYS KHDSIGMRKT  60
LVFYKAQAPN GQNQIGSCTS IDFKHTKMAH HRQVSQIITF I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-15117170130NO APICAL MERISTEM PROTEIN
1ut4_B7e-15117170130NO APICAL MERISTEM PROTEIN
1ut7_A7e-15117170130NO APICAL MERISTEM PROTEIN
1ut7_B7e-15117170130NO APICAL MERISTEM PROTEIN
3swm_A7e-15117173133NAC domain-containing protein 19
3swm_B7e-15117173133NAC domain-containing protein 19
3swm_C7e-15117173133NAC domain-containing protein 19
3swm_D7e-15117173133NAC domain-containing protein 19
3swp_A7e-15117173133NAC domain-containing protein 19
3swp_B7e-15117173133NAC domain-containing protein 19
3swp_C7e-15117173133NAC domain-containing protein 19
3swp_D7e-15117173133NAC domain-containing protein 19
4dul_A7e-15117170130NAC domain-containing protein 19
4dul_B7e-15117170130NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0063ss00900.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-163AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773837.11e-35PREDICTED: NAC domain-containing protein 7-like
SwissprotO655083e-32NAC76_ARATH; NAC domain-containing protein 76
TrEMBLA0A1U7W1C33e-34A0A1U7W1C3_NICSY; NAC domain-containing protein 7-like
TrEMBLA0A498JJ389e-35A0A498JJ38_MALDO; Uncharacterized protein
TrEMBLV4RL721e-34V4RL72_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_009773837.15e-35(Nicotiana sylvestris)
STRINGXP_006421693.12e-35(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36160.11e-34NAC domain containing protein 76
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]