PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang0062ss00210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 288aa MW: 31269 Da PI: 6.8501 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00032 | 136 | 158 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Vang0062ss00210.1 136 FSCNYCRRKFYSSQALGGHQNAH 158 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.35E-6 | 134 | 164 | No hit | No description |
PROSITE profile | PS50157 | 11.385 | 136 | 163 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 138 | 158 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 288 aa Download sequence Send to blast |
LVGLGRCLAT ACEGRSLQIY RTVLWFVIAF WEKSELLTGP YNMMTPNLNL EPENHSEGSS 60 QVASNVSLHE ASYDLTKGST TTSSCLTKDE TDPGSVTLDL TLNFNSSDSE LKGSSDASSE 120 VGAEPPASAS ATPRVFSCNY CRRKFYSSQA LGGHQNAHKR ERTMAKRALR MGMFTERYTS 180 LASLPLHGSP FRSLGLEAHS AMHQRHVSSS LRTPDMRAAA RFERNHFGSL VFMEDDDVGL 240 FWPGSFRQVD QGAGVTEGHV QSSNPSLVPI VPPPPQVSAS PDLTLKL* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang0062ss00210.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017442846.1 | 0.0 | PREDICTED: zinc finger protein 4-like | ||||
Swissprot | Q39263 | 6e-41 | ZFP4_ARATH; Zinc finger protein 4 | ||||
TrEMBL | A0A0L9T381 | 1e-179 | A0A0L9T381_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R135 | 1e-179 | A0A0S3R135_PHAAN; Uncharacterized protein | ||||
STRING | XP_007158792.1 | 1e-161 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66140.1 | 2e-41 | zinc finger protein 4 |
Publications ? help Back to Top | |||
---|---|---|---|
|