PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0062ss00080.1 | ||||||||
Common Name | LR48_Vigan252s001000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 310aa MW: 35712.5 Da PI: 6.9059 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52 | 8.9e-17 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 ie + r++tf kR+ng++KK +E S+LC ++v viif+s+ Vang0062ss00080.1 11 IEKEKARKTTFQKRKNGLMKKVYEFSTLCSVDVGVIIFASK 51 899999********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 20.184 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.2E-19 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 4.83E-21 | 2 | 51 | No hit | No description |
SuperFamily | SSF55455 | 8.5E-21 | 2 | 86 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-11 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-18 | 11 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-11 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-11 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MGRGRIPMDL IEKEKARKTT FQKRKNGLMK KVYEFSTLCS VDVGVIIFAS KFLDEPEIWP 60 QDPRELKRVI EKYLNTTSDR RPKVYDVEEY FDERMKRIEG EISKVQKGKI QLIYPTWDDS 120 YNTLEEEQLR MFVSILDAKL DACNQRMNMF KRDSKGKVIA ESDNDEALVP YLAPTLGSHL 180 SFMQNMSQTQ VFPTNDNNRV PFYPCHLSQN SLPSLFQLGQ NFTQLIEKNI AVDWNNQVGA 240 SDHRIDTQQE DRTNKNQNPS SCYYDANIQT MQPYNNVALQ TLPAQLQCDA TFQSLSNRPG 300 LALSAKLCH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0062ss00080.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017406398.1 | 0.0 | PREDICTED: MADS-box transcription factor 3-like | ||||
TrEMBL | A0A0L9T6U3 | 0.0 | A0A0L9T6U3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007158806.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF534 | 31 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 5e-24 | M-type_MADS family protein |
Publications ? help Back to Top | |||
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