PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0058ss00460.1 | ||||||||
Common Name | LR48_Vigan05g201000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 139aa MW: 15414.2 Da PI: 6.1294 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.3 | 2.4e-10 | 14 | 43 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 rg W++eEde+l+++++ +G g+W+++++ Vang0058ss00460.1 14 RGLWSPEEDEKLINYITTYGHGCWSSVPKL 43 789************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-14 | 6 | 43 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.61E-9 | 9 | 44 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.036 | 9 | 62 | IPR017930 | Myb domain |
Pfam | PF00249 | 8.2E-8 | 14 | 44 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.30E-6 | 17 | 42 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIT TYGHGCWSSV PKLAESTWSS LGCVPIHLNP 60 NQQSQTITTK SDTTPHLILE KFINPSTWQN QAVEPTIDLV PKVCESIEDY VCSIPFSSSA 120 NSQHQHEDAV ACYTPEGK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0058ss00460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 1e-152 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017424677.1 | 4e-57 | PREDICTED: transcription factor MYB26-like | ||||
TrEMBL | A0A0L9UNC8 | 9e-56 | A0A0L9UNC8_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA13G42431.1 | 3e-37 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17500 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13890.2 | 2e-25 | myb domain protein 26 |
Publications ? help Back to Top | |||
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