PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0058ss00300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LBD | ||||||||
Protein Properties | Length: 206aa MW: 23442.9 Da PI: 9.8786 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 103.4 | 2e-32 | 14 | 100 | 1 | 87 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 aCaaCk++rrkC ++C+lap fp ++k+f n+hklFG+ ++++++k l++ +r+ a++++++e+++ra+dPv G++++il lq+ l Vang0058ss00300.1 14 ACAACKFQRRKCGPNCILAPFFPPYRQKQFLNAHKLFGVGKITSMIKPLDPVNRNSAIDAIIFESDMRAKDPVGGCLRTILYLQSYL 100 7*********************************************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.563 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-30 | 14 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MEGGTSSSRS TIQACAACKF QRRKCGPNCI LAPFFPPYRQ KQFLNAHKLF GVGKITSMIK 60 PLDPVNRNSA IDAIIFESDM RAKDPVGGCL RTILYLQSYL SLRGYRRWMT SANIKIPDGC 120 GYDQCVLSWS QESNDMVDAS LAVVWVRNQR GIGVVLNRSR FKSEGEWWVR SWPRSRRNTD 180 QCYEKLLLNL EEGEAVHDTR AAWRR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-24 | 15 | 97 | 12 | 94 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-24 | 15 | 97 | 12 | 94 | LOB family transfactor Ramosa2.1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0058ss00300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 1e-163 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4133 | 32 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 1e-33 | LOB domain-containing protein 22 |