PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0058ss00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 336aa MW: 37766.9 Da PI: 7.151 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.4e-05 | 31 | 55 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 +kC+ C k F+ k++L H++t H Vang0058ss00040.1 31 HKCSACYKQFKKKEHLIEHMKTsnH 55 79*******************9777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 12.009 | 31 | 60 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 33 | 55 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00479 | 0.0032 | 154 | 280 | IPR013520 | Exonuclease, RNase T/DNA polymerase III |
SuperFamily | SSF53098 | 2.28E-11 | 156 | 274 | IPR012337 | Ribonuclease H-like domain |
Gene3D | G3DSA:3.30.420.10 | 7.8E-9 | 181 | 247 | IPR012337 | Ribonuclease H-like domain |
Gene3D | G3DSA:3.30.420.10 | 6.4E-4 | 248 | 282 | IPR012337 | Ribonuclease H-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
LRHTNIALHA FDLPFDMEAK ADSTQNPTPR HKCSACYKQF KKKEHLIEHM KTSNHSVHQP 60 ACGVCQKHCK SFESLREHLT GPLPKGVCSK TFSQRGCQLC LVLFDSPGSL IAHRETCCLS 120 APTRLGTKEL TYIDSHFECQ DSSDENHAGR GPGGTVAIDC EMVGGGSDGS LELCARRGEM 180 IYDITGLTEE HLRNAMPLNE VKEKVCKILY NGENLGKIRL NGGKARLLVG HDLAHDLYCL 240 NMHYPDHMLS YDIQSGTHDP YEDCVSVMRL YKRIRAQMHP EEEDHGTSTP SNRIVGVHDC 300 WRSKELDNRT PDQLYAMSRS DYKCWCLDLR PKLPT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0058ss00040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097020 | 1e-144 | BT097020.1 Soybean clone JCVI-FLGm-21B17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017423227.1 | 0.0 | PREDICTED: RNA exonuclease 4-like | ||||
TrEMBL | A0A1S3U5D8 | 0.0 | A0A1S3U5D8_VIGRR; apoptosis-enhancing nuclease isoform X1 | ||||
STRING | XP_007150536.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2574 | 3 | 4 |