PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0057ss01710.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

CAMTA

Protein Properties

Length: 1185aa MW: 134958 Da PI: 7.1931

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0057ss01710.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	164.1	2.5e-51	17	132	3	117
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 +e kkrwlk+ e++ iL n++ elt++++++p gsl L+nr+++ryfrkDG++w+kkkdg+tv E+he+LKvg+ e+l+cyYah+een++ Vang0057ss01710.1 17 QEaKKRWLKPVEVLYILRNHDMCELTHQPPHQPAGGSLYLFNRRVTRYFRKDGHNWRKKKDGRTVGEAHERLKVGNEEILNCYYAHGEENRS 108 5669************************************************************************************** PP CG-1 94 fqrrcywlLeeelekivlvhylev 117 fqrr+yw+Le ++e+ivlvhy e+ Vang0057ss01710.1 109 FQRRSYWMLEPKYEHIVLVHYSET 132 *******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	73.998	12	138	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.8E-65	15	133	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	4.2E-46	18	131	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	1.1E-4	414	503	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	2.49E-12	414	500	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	3.9E-15	607	703	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.379	609	701	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	3.73E-15	613	705	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	7.2E-8	627	702	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.03E-12	629	701	No hit	No description
PROSITE profile	PS50088	11.14	642	674	IPR002110	Ankyrin repeat
SMART	SM00248	0.0019	642	671	IPR002110	Ankyrin repeat
SMART	SM00248	2400	681	710	IPR002110	Ankyrin repeat
SMART	SM00015	6.7	758	780	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.675	759	788	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	4.78E-8	759	810	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00612	0.03	762	779	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0032	781	803	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.999	782	806	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.7E-4	784	803	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1185 aa Download sequence Send to blast
LITMSPGLEY NIVDLFQEAK KRWLKPVEVL YILRNHDMCE LTHQPPHQPA GGSLYLFNRR 60 VTRYFRKDGH NWRKKKDGRT VGEAHERLKV GNEEILNCYY AHGEENRSFQ RRSYWMLEPK 120 YEHIVLVHYS ETSKGKSNSQ LSSGSSLAFS QSQSPYAAHE PGTSSIFVDS YELNHNFSSP 180 PGSLEVTSEA QALRQLEEEL NTNEDSFNER VIYKDKSTIL SLPNDQGPLR YNGRQVIDVF 240 LLPVQHMPVA SSSLTTNMLN HKERKAKSSE ISVFSVDNSD TYCHDFPDDY PDGNEKTICW 300 TEVLQACKPL PVTNIPDQYG YKAFENEQSL FYSGRDMIAN MENNRWPNSN CNNVENSVFA 360 LPQGDSGVKF PLCSRVENPV TTSDYYGTFF DQTQIQEPLG VDSSLTVERK QKFTIRTVSP 420 EYCYATETTK ARVVIIGSFL YHHPDSTWAC MFGDVEVPAK IIQDGVISCE TPSNLLGKVK 480 LCITSGNRVP CSEVIEFEFR NKATSCTRCN SLETEDGRSP EDLLLLVRFA EMLHSSTKKD 540 DSTESGSHLS TEQKDGDDLW IDTLLVGSGK SSDTVKWLLE ELLKDKLQLW LSNRSYERDE 600 GTDCSLSKKE QGIIHMISGL GFEWALNPIL SCGVNINFRD INGWTALHWA AKFGREKMVA 660 SLVASGASAE AVTDPSSQNP SGETAASVAA SHGHKGLAGY LSEVHLTSHL SSLTLTASKI 720 SEGASELEAE LTVSNVSEEN IVAMLSAMSK LSSRSLGDYN LAALSIQKKY RGWKGRKEFL 780 ALRQKVVKIQ AIVRGYQARK QYKILLWAVG ILNKVVLRWR RKRVGITSVR QEMDSNEEES 840 DDEDFLNVFR KKKVNGAIQM ALKRVLSMVR HEDARHQYRR LLSLYRQAKI DRIISKLNVT 900 VQVMKHRHQL QKRTLSIWKT MIGICYGKNY VLRKFYVSLV INFWLSVYYW MCRYINRQIL 960 RMNNFDPSTV NKTIRPRLLS FSFTWQQRWM IDNSTNNNYL SPVTMEQDRR LQLIDNAIQK 1020 LIQDDHDKNN TNKIRESHHN DDDRYQNALS HLLSVSQWNI LKGEEINEEF EDSRSSEPVA 1080 PVTEATENDE IMKELKKVKR QNFVTHCLLS VMIVLTVVWQ VSEVSLILQL KDGLSHPFRS 1140 FGNMLKGMVK VPHVKGQDAD DDEQLLESSS LPSMIIPDMS HAGN*

Sequence ? help Back to Top

Protein Sequence Length: 1185 aa Download sequence Send to blast

LITMSPGLEY NIVDLFQEAK KRWLKPVEVL YILRNHDMCE LTHQPPHQPA GGSLYLFNRR  60
VTRYFRKDGH NWRKKKDGRT VGEAHERLKV GNEEILNCYY AHGEENRSFQ RRSYWMLEPK  120
YEHIVLVHYS ETSKGKSNSQ LSSGSSLAFS QSQSPYAAHE PGTSSIFVDS YELNHNFSSP  180
PGSLEVTSEA QALRQLEEEL NTNEDSFNER VIYKDKSTIL SLPNDQGPLR YNGRQVIDVF  240
LLPVQHMPVA SSSLTTNMLN HKERKAKSSE ISVFSVDNSD TYCHDFPDDY PDGNEKTICW  300
TEVLQACKPL PVTNIPDQYG YKAFENEQSL FYSGRDMIAN MENNRWPNSN CNNVENSVFA  360
LPQGDSGVKF PLCSRVENPV TTSDYYGTFF DQTQIQEPLG VDSSLTVERK QKFTIRTVSP  420
EYCYATETTK ARVVIIGSFL YHHPDSTWAC MFGDVEVPAK IIQDGVISCE TPSNLLGKVK  480
LCITSGNRVP CSEVIEFEFR NKATSCTRCN SLETEDGRSP EDLLLLVRFA EMLHSSTKKD  540
DSTESGSHLS TEQKDGDDLW IDTLLVGSGK SSDTVKWLLE ELLKDKLQLW LSNRSYERDE  600
GTDCSLSKKE QGIIHMISGL GFEWALNPIL SCGVNINFRD INGWTALHWA AKFGREKMVA  660
SLVASGASAE AVTDPSSQNP SGETAASVAA SHGHKGLAGY LSEVHLTSHL SSLTLTASKI  720
SEGASELEAE LTVSNVSEEN IVAMLSAMSK LSSRSLGDYN LAALSIQKKY RGWKGRKEFL  780
ALRQKVVKIQ AIVRGYQARK QYKILLWAVG ILNKVVLRWR RKRVGITSVR QEMDSNEEES  840
DDEDFLNVFR KKKVNGAIQM ALKRVLSMVR HEDARHQYRR LLSLYRQAKI DRIISKLNVT  900
VQVMKHRHQL QKRTLSIWKT MIGICYGKNY VLRKFYVSLV INFWLSVYYW MCRYINRQIL  960
RMNNFDPSTV NKTIRPRLLS FSFTWQQRWM IDNSTNNNYL SPVTMEQDRR LQLIDNAIQK  1020
LIQDDHDKNN TNKIRESHHN DDDRYQNALS HLLSVSQWNI LKGEEINEEF EDSRSSEPVA  1080
PVTEATENDE IMKELKKVKR QNFVTHCLLS VMIVLTVVWQ VSEVSLILQL KDGLSHPFRS  1140
FGNMLKGMVK VPHVKGQDAD DDEQLLESSS LPSMIIPDMS HAGN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0057ss01710.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017405516.1	0.0	PREDICTED: calmodulin-binding transcription activator 4-like isoform X2
Swissprot	Q9FYG2	1e-173	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A0S3S1C0	0.0	A0A0S3S1C0_PHAAN; Uncharacterized protein
STRING	XP_007163775.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4548	29	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	1e-148	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]