PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0057ss01450.1 | ||||||||
Common Name | LR48_Vigan102s007900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 400aa MW: 46081.2 Da PI: 8.8643 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 142 | 165 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C Cg+ F +++ L++H + H Vang0057ss01450.1 142 YRCRVCGRKFHTNDKLVNHFKQlH 165 9******************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.1010 | 4.6E-7 | 61 | 145 | IPR029060 | PIN domain-like |
SuperFamily | SSF57667 | 1.81E-6 | 138 | 168 | No hit | No description |
PROSITE profile | PS50157 | 11.843 | 142 | 170 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0068 | 142 | 165 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 144 | 165 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.0E-4 | 146 | 166 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
CDD | cd06167 | 4.16E-13 | 159 | 283 | No hit | No description |
Pfam | PF01936 | 5.9E-7 | 214 | 294 | IPR021139 | NYN domain, limkain-b1-type |
Gene3D | G3DSA:3.40.50.1010 | 4.6E-7 | 227 | 282 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MVTFKSYLTY RRTDNPFKVS RFRSICFFTL EATCWHIYGG LRYYHSGSEW GKNQKLNPNE 60 KPNRVGLFWD LDNKPPNAIP PFDVANKLRI AASSFGIVRY MVAYANSHTF SHVPQSVREK 120 RKERELLYRL ENKGVIKPNE PYRCRVCGRK FHTNDKLVNH FKQLHEREHG KRINQIESAR 180 GNRRVKLVAK YSMKMEKYKK AASAILTPKV GYGLADELKR AGFWVQTVLD KPQAADRALQ 240 SHIVDVMDHR RVECVVLVSD DSDFVDVIKE ARLRCLKTVV VGDIDDGVLK RTADTAFSWE 300 EILMGKAKKQ AASVVKNWKD RDILKRLEWT YNPDADKNKL DVDVDDIVAE TSEDDNIEDT 360 SDEVDDVYKD DRGSWWELDS DNDVSEGQSG KLSDLSVHK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0057ss01450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017405477.1 | 0.0 | PREDICTED: uncharacterized protein LOC108318993 | ||||
TrEMBL | A0A0L9T4Z6 | 0.0 | A0A0L9T4Z6_PHAAN; Uncharacterized protein | ||||
STRING | XP_007163793.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7500 | 25 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12240.1 | 1e-123 | C2H2 family protein |
Publications ? help Back to Top | |||
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