PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0057ss00970.2

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

LBD

Protein Properties

Length: 159aa MW: 17871.4 Da PI: 6.8541

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0057ss00970.2	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	109.9	1.8e-34	1	93	8	100
DUF260 8 lrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 l+r+C+++C++apyf +++ kkfa vhk+FGasnv+k+l +++ee+red+++sl+yeAear+rdPvyG++g i lq+++ +l+++la +k+ Vang0057ss00970.2 1 LKRRCVPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVSEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIAKD 92 5899***********************************************************************************99987 PP DUF260 100 e 100 + Vang0057ss00970.2 93 R 93 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.2E-33	1	91	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	22.035	1	94	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
LKRRCVPNCI FAPYFRSDEC KKFAKVHKVF GASNVSKILI EVSEEQREDT VNSLAYEAEA 60 RLRDPVYGCI GAIALLQRKM VELQHDLAIA KDRLARCHAA ATVLPSPDIL HAHVSLPPFP 120 DFCTSSNDFN DIFCHSSSSQ LFSRHETVDD FNQIPYIF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-38	1	96	18	113	LOB family transfactor Ramosa2.1
5ly0_B	6e-38	1	96	18	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0057ss00970.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007163564.1	1e-113	hypothetical protein PHAVU_001G244700g
Refseq	XP_027915717.1	1e-113	LOB domain-containing protein 21-like
Swissprot	Q9SRL8	5e-49	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A0S3S0U1	1e-113	A0A0S3S0U1_PHAAN; Uncharacterized protein
STRING	XP_007163564.1	1e-113	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	2e-51	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]