PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0057ss00300.1 | ||||||||
Common Name | LR48_Vigan03g305500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 280aa MW: 31008.7 Da PI: 5.0308 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.4 | 1.2e-20 | 103 | 153 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f taeeAa a+++a+ kl+ge Vang0057ss00300.1 103 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEEAALAYDNAAFKLRGE 153 59******9.**********965...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.15E-35 | 102 | 162 | No hit | No description |
SuperFamily | SSF54171 | 5.36E-23 | 103 | 161 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.0E-40 | 103 | 166 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.0E-33 | 103 | 161 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.472 | 103 | 160 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-11 | 104 | 115 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-14 | 104 | 153 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-11 | 126 | 142 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MDIYNNSSIV LSDFLDPCND QELMKALEPF MKTDSSITYP SLSSPNFSSN YDQKPSIKLN 60 QLTPSQTFQI QAQIQVTRAQ FLSPKPVPMK QVGGRVLSKP TKLYRGVRQR HWGKWVAEIR 120 LPKNRTRLWL GTFETAEEAA LAYDNAAFKL RGENARVNFP HLRHHGPSVY GELGTYKPLP 180 SAVDAKLEAI CKSLAMTTPK EETATTSEFE DVKVGIQTTS SPLSDEYSSS SSSAGSSSPE 240 SDITFLDFSD SYEAMDNLGL DLEKYPSVEI DWAALSESS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-23 | 102 | 160 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0057ss00300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017417409.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF060 | ||||
Swissprot | O65665 | 1e-75 | ERF60_ARATH; Ethylene-responsive transcription factor ERF060 | ||||
TrEMBL | A0A0L9UA92 | 0.0 | A0A0L9UA92_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3S117 | 0.0 | A0A0S3S117_PHAAN; Uncharacterized protein | ||||
STRING | XP_007163638.1 | 1e-156 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 2e-62 | ERF family protein |
Publications ? help Back to Top | |||
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