PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0057s00230.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 512aa    MW: 55755.9 Da    PI: 7.0807
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0057s00230.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55.1e-16327378155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Vang0057s00230.1 327 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 378
                       57****************988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.008210292IPR001471AP2/ERF domain
SMARTSM003803.3E-4252298IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-8260294IPR016177DNA-binding domain
CDDcd000184.15E-11260294No hitNo description
Gene3DG3DSA:3.30.730.106.1E-9260293IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-18327387IPR016177DNA-binding domain
PfamPF008472.7E-10327378IPR001471AP2/ERF domain
CDDcd000189.08E-12327386No hitNo description
PROSITE profilePS5103219.164328386IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-18328386IPR001471AP2/ERF domain
SMARTSM003806.0E-31328392IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MRKWGNKSYG FEFCDWTQTI SGTAAWWGNG NLKPQVLMDQ NLNQSDVSFV ESSQSQSQSV  60
SHAPPPKLED FLGDSSAVMR YSDSQTETQD SSLTHMYDHH GSAYFGDQQD LKAIAGFQAF  120
STNSGSEVDD SASIGKAQPS EFGTHSIESS GNEFTAFSGG PTGTLSLAVA QSSEKKVVAA  180
DSSSSKKIVD TFGQRTSIYR DTDGQVDMKR IYGTTVAGGR VKPGKGVKLM FDIFGFSFAW  240
NGTLVHFWLS FNFLTLVQFI WVSGYDKEEK AARAYDLAAL KYWGPTATTN FPVSNYSKEL  300
EEMKHVTKQE FIASLRRKSS GFSRGASIYR GVTRHHQQGR WQARIGRVAG NKDLYLGTFA  360
TEEEAAEAYD IAAIKFRGAN AVTNFEMNRY DVEAIMKSAL PVGGAAKRLK LSLESEQKVG  420
VSSSQQNPPC GNVSGSINFS AIHQPVASIP CGIPFDSSTA YYHHNLFQHF HPTNAATAVS  480
TVTSGNVAGL TALPPPATTA AEFFIWPHQS Y*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0057s00230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017406647.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-134AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A0S3T2I50.0A0A0S3T2I5_PHAAN; Uncharacterized protein
STRINGXP_007158361.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.31e-128AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]