PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0053ss00150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 381aa MW: 43467.6 Da PI: 6.2419 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 36.1 | 8.1e-12 | 68 | 108 | 1 | 41 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 k+i+n++ r++tf +R++g++KK +E S C+ e ++i++ Vang0053ss00150.1 68 KQISNERSRKTTFLRRKTGLMKKISEFSKRCGGEHCLIMYD 108 68*************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.18E-14 | 60 | 139 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.301 | 60 | 110 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.3E-9 | 60 | 121 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.1E-6 | 62 | 82 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-12 | 70 | 110 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.1E-6 | 82 | 97 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MLLVDNFIHA DMHPTNILVR VAQRKSRKRL FKSKPHVVFL DVVLSVAIEL FLVCAVLQNM 60 GRARITLKQI SNERSRKTTF LRRKTGLMKK ISEFSKRCGG EHCLIMYDDN ADGDVEAVTS 120 PENPVEIHSM IQKYYETQLK KERPHKTYGI EEFFKNRKKM IEAEISKVHK QISSIKYPTW 180 DPSFVNMEED QLRALCARVE AKIEACDEGI KLLKNHKNVP SLMQNFSHGQ IIQTPIQALD 240 NEISYLLRNM QEGGGDDAWF SFVPNMAQEN ATATTSHPNQ VNCLQNISQS QPLLEDFMEL 300 YDKNYEAVDV PLNSINLFSE LEVEELIREL SNEGCDNPVG FSSQPHESIL PSISAEYQNQ 360 HQGGGPLNAL PQTNYYDMLF * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0053ss00150.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027925169.1 | 1e-157 | agamous-like MADS-box protein AGL8 homolog | ||||
TrEMBL | A0A0L9VMF9 | 0.0 | A0A0L9VMF9_PHAAN; Uncharacterized protein | ||||
STRING | XP_007151607.1 | 1e-131 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF534 | 31 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 7e-19 | M-type_MADS family protein |