PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang0051s00370.1 | ||||||||
Common Name | LR48_Vigan03g143700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 307aa MW: 34365.2 Da PI: 7.4795 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00012 | 56 | 78 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H Vang0051s00370.1 56 YSCTFCTREFRSAQALGGHMNVH 78 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.48E-6 | 53 | 82 | No hit | No description |
SMART | SM00355 | 0.0097 | 56 | 78 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.136 | 56 | 83 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 58 | 78 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 307 aa Download sequence Send to blast |
MEEGQCLIRS KRKYSLSSSL HGSSTDYPSC DDHSWEEQAF AKDAAWSGCV WPPRSYSCTF 60 CTREFRSAQA LGGHMNVHRR DRARLKQPHS PQNEILNYDL EKTQAQNSVQ ISFTSLGYLY 120 PPSISGLAHN TNPNSDPYSH VVASPSKVLC TPVNKRCREK PQIPQYNSSS IFKGCHESSP 180 SLSSKSWPNL TDDFRFCSSR LDLEASVEKK LQGFDSGCRS EGDKGKTEVG VSMNLFMSRA 240 HPVVQSENKE TDTSFKKRKS EASSIPFFPK SCSVDKDHVQ SETFDFSPSS IEELDLELRL 300 GHRSEV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 5e-12 | 51 | 78 | 2 | 29 | superman protein |
2l1o_A | 5e-12 | 51 | 78 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang0051s00370.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017418151.1 | 0.0 | PREDICTED: probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | A0A0L9U5K2 | 0.0 | A0A0L9U5K2_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RVL6 | 0.0 | A0A0S3RVL6_PHAAN; Uncharacterized protein | ||||
STRING | XP_007140494.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1776 | 30 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06070.1 | 5e-23 | C2H2 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|