PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0051s00260.1 | ||||||||
Common Name | LR48_Vigan03g142300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ARF | ||||||||
Protein Properties | Length: 662aa MW: 74099.4 Da PI: 6.3329 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.2 | 1.7e-24 | 116 | 216 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+kvlt sd++++g +++ +k+a+e+ ++k++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + s Vang0051s00260.1 116 FCKVLTASDTSTHGGFSVLRKHATEClpaldMSKSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RGS 206 99****************************9555555679************************************************..449 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+v+r Vang0051s00260.1 207 NGELRVGVRR 216 999*****98 PP | |||||||
2 | Auxin_resp | 91.4 | 1.6e-30 | 242 | 323 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl..sGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F+v+v+k+++a+++k+ vGmR+km++e++ds e+ sGt++gv+d++p +W nSkWrsLk Vang0051s00260.1 242 ASHAVATQTLFVVYYKPRT--SQFIVSVNKYLEAINQKCNVGMRLKMRLEGDDSTETDKriSGTIIGVEDISP-HWVNSKWRSLK 323 789***************6..9********************************9864444**********99.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.06E-39 | 107 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-39 | 109 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.46E-20 | 114 | 216 | No hit | No description |
PROSITE profile | PS50863 | 12.238 | 116 | 218 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.2E-22 | 116 | 218 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-22 | 116 | 216 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.0E-29 | 242 | 323 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.9E-8 | 479 | 587 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.529 | 551 | 632 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.18E-12 | 554 | 627 | No hit | No description |
Pfam | PF02309 | 1.5E-6 | 594 | 638 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 662 aa Download sequence Send to blast |
MSLHRGEGDE LYEQLWKACA GPHVEIPRAG QRVFYFPQGH MEQLEVSTNQ ELNQRIPLFK 60 LPSEILCRVV NVHLLAEPET DEVYAQITLV PENNQTEPTS PDPCPSEVPR PRVHSFCKVL 120 TASDTSTHGG FSVLRKHATE CLPALDMSKS TPTQELVAKD LHGYEWRFKH IFRGQPRRHL 180 LTTGWSTFVT SKRLVAGDTF VFLRGSNGEL RVGVRRLTPV QSSMPSSVIS SQSMHLGVLA 240 TASHAVATQT LFVVYYKPRT SQFIVSVNKY LEAINQKCNV GMRLKMRLEG DDSTETDKRI 300 SGTIIGVEDI SPHWVNSKWR SLKVQWDETP SFPRPDRVSP WEIEPILASV PTTMSSQPVV 360 LKNKRPRQAT EVPDLGDTPL IAPTFWDPGL TQSDITQLGV ITESKRSEST AHMWHHNNNS 420 SSNISMNQRK ASWLSSPSHL YLDTSDDSKS ISASPISKIH SERLNNDHCL DQVDKEISNV 480 EPATGCRLFG IDLIDHTRSN SLSVDNASAV TSEGRTDANH ESDISKASKE WKQEQLQVSP 540 KETQNKQICS RSCTKVQMQG VAVGRAVDLT TLDGYEQLVD ELEKMFDIKG QLQHRNKWEI 600 VFTDDEGDMM LVGDDPWPEF CNMVRRIFIC SSQDVHKLSS GSKLPISSME DSVISSDTAE 660 T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-162 | 9 | 346 | 17 | 355 | Auxin response factor 1 |
4ldw_A | 1e-162 | 9 | 346 | 17 | 355 | Auxin response factor 1 |
4ldw_B | 1e-162 | 9 | 346 | 17 | 355 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0051s00260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017419413.1 | 0.0 | PREDICTED: auxin response factor 9-like isoform X1 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A0L9U5J9 | 0.0 | A0A0L9U5J9_PHAAN; Auxin response factor | ||||
STRING | XP_007140507.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1511 | 33 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.2 | 0.0 | auxin response factor 9 |
Publications ? help Back to Top | |||
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