PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0051s00070.3
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 744aa    MW: 82903.7 Da    PI: 6.4726
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0051s00070.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS340.43.2e-1043547101359
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL+ cA+av+++d + a+++L+r+++++sp gd +qRla+ f+ +L+arla+++s++yk l +++ts    ++ l+a++l+  ++P+ k+
  Vang0051s00070.3 354 LRTLLVLCAQAVAADDYSGAHEFLKRIRKHSSPFGDGNQRLAHIFADGLEARLAGTGSQIYKGLVSKRTS---AADFLKAYHLYLAACPFRKM 443
                       5789************************************************************999999...9******************* PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       s ++ N +I e+  ++ rvH+iDf+i +G+QWp+++q L+   +gpp+lRiTg++ p++g   +e++ etg+rLa +Ae+++vpfe+n+ +ak
  Vang0051s00070.3 444 SSFISNVTIRESSTNSARVHVIDFGILYGFQWPTFIQRLSLAVGGPPKLRITGIDFPQPGfrPAERIVETGRRLAAYAESFKVPFEYNA-IAK 535
                       ***********************************************************9*****************************.7** PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                       ++e+++leeL+++++E l+V + ++ +++ldesv ++s+r+++L+l+++++P+++++   +   n++ F++rf eal +ys+lfd+le+ +p+
  Vang0051s00070.3 536 KWETVQLEELKIDREEYLVVTCFYRGKNVLDESVLVDSPRNKFLSLIRKINPDLFIHGITNGAFNAPFFVTRFREALFHYSSLFDMLETIVPQ 628
                       ********************************************************************************************* PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                       e+ er+ +E+e++gre+ nv+aceg er+er et+++W++r+ +aGF++ ++++  +k a   +++ + + + ++e+s++l+
  Vang0051s00070.3 629 EDWERMLIEKEIFGREALNVIACEGCERVERPETYRQWQARILRAGFSQQSFEHALVKRAIEKVSTSYHKDFVIDEDSQWLL 710
                       *****************************************************************999888*******9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.066328705IPR005202Transcription factor GRAS
PfamPF035141.1E-101354710IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 744 aa     Download sequence    Send to blast
MLSLGTSVLV GLQRGNQRFE NGFFDQSRDF GYLQSNLVPS KTPSSSSVLT HEEPSPEECE  60
FSDAILSYIS QILMEEDMED KTCMLHDSLD LQIAERSFYE VIGEKYPSSL LGNPSPVDPG  120
GGVGDHNFSE NYGTCSYNDG DLSSIFTNFR QNLGELPNHN LRGNSISQSS CSSSNSVISS  180
VEGPVDSPSS ILQVPDLNSE SQSILQFQKG VEEASKFLPS GNDLFANLGV ANFSKLEPKM  240
GCDELSVKVE KDVGESFLAG SKGRKHNLSE EVDFEENRSS KQAAIFSEPT LPSSSIDVIL  300
LHSLGDGKKV FMARREALQT KNDKIALSNG KSKASNSGKG RSKKQSGKKE VIDLRTLLVL  360
CAQAVAADDY SGAHEFLKRI RKHSSPFGDG NQRLAHIFAD GLEARLAGTG SQIYKGLVSK  420
RTSAADFLKA YHLYLAACPF RKMSSFISNV TIRESSTNSA RVHVIDFGIL YGFQWPTFIQ  480
RLSLAVGGPP KLRITGIDFP QPGFRPAERI VETGRRLAAY AESFKVPFEY NAIAKKWETV  540
QLEELKIDRE EYLVVTCFYR GKNVLDESVL VDSPRNKFLS LIRKINPDLF IHGITNGAFN  600
APFFVTRFRE ALFHYSSLFD MLETIVPQED WERMLIEKEI FGREALNVIA CEGCERVERP  660
ETYRQWQARI LRAGFSQQSF EHALVKRAIE KVSTSYHKDF VIDEDSQWLL QAINVIFTLG  720
DMLHTRWHVA IPAVSRAKVT RTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-3936167526329Protein SCARECROW
5b3h_A3e-3936167525328Protein SCARECROW
5b3h_D3e-3936167525328Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0051s00070.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017419167.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A0L9U5I50.0A0A0L9U5I5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RV340.0A0A0S3RV34_PHAAN; Uncharacterized protein
STRINGXP_007140522.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein