PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0045ss01540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 288aa MW: 32155.4 Da PI: 6.5965 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.3 | 5.4e-20 | 32 | 82 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+t eeAa a+++a+ kl+ge Vang0045ss01540.1 32 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTGEEAALAYDNAAFKLRGE 82 59******9.**********965...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.85E-33 | 31 | 91 | No hit | No description |
PROSITE profile | PS51032 | 22.919 | 32 | 89 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-31 | 32 | 90 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-23 | 32 | 90 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.9E-38 | 32 | 95 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.7E-15 | 33 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.5E-11 | 33 | 44 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.5E-11 | 55 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MVYSTQRENR TQLGPKRVLM KHGGAAAKAT KLYRGVRQRH WGKWVAEIRL PKNRTRLWLG 60 TFDTGEEAAL AYDNAAFKLR GEFARLNFPH LRHQGAFVFG EFGDYKPLPS SVDSKLQAIC 120 ESLAKQEQQK TCCSVEDVKP EVHTAAELAR VESDVVQSNV CPEFDNFKVE NGNDNPMLSS 180 PVSGESSSPE SGVTFLDFSD FAHSNYEWDE MESFGLEKYP SGYVWVSLAA SAMEFLTFAD 240 VLRKHGLQIF GSEIREGGRV HGLHGLPVFF VTCMTMGPFY SCLCSML* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-21 | 31 | 89 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0045ss01540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017422443.1 | 1e-153 | PREDICTED: ethylene-responsive transcription factor ERF060 | ||||
Swissprot | Q8H1E4 | 1e-60 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A0L9TKK3 | 1e-151 | A0A0L9TKK3_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3QYG4 | 1e-151 | A0A0S3QYG4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007159638.1 | 1e-123 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 4e-62 | related to AP2 4 |
Publications ? help Back to Top | |||
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