PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0045ss01430.2 | ||||||||
Common Name | LR48_Vigan01g027700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 315aa MW: 35145.6 Da PI: 7.76 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22 | 4.2e-07 | 121 | 142 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C+ Cgk F+r nL+ H+r H Vang0045ss01430.2 121 FCEVCGKGFTRDANLRMHMRAH 142 6*******************99 PP | |||||||
2 | zf-C2H2 | 13.3 | 0.00025 | 206 | 228 | 2 | 23 |
EETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCg.ksFsrksnLkrHirtH 23 +C+ C ksF s+Lk+H++ + Vang0045ss01430.2 206 SCERCRkKSFAVLSDLKSHMKQC 228 7*******************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.82E-6 | 118 | 145 | No hit | No description |
SMART | SM00355 | 0.0018 | 120 | 142 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.508 | 120 | 147 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12874 | 7.0E-4 | 121 | 140 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.1E-7 | 122 | 145 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 122 | 142 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 29 | 167 | 200 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 160 | 205 | 226 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 7.5E-5 | 219 | 253 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MPNTTQQFPI NNINFNNDSL HVSLRNLSQL STRMDSLQSF VSQSIQSHTL LTHHQMNIVS 60 NEILTAIRHV ITNGAALVAA SEDVLSLSET PTSEYSPNPN TNQTNVVELD AMELLAQHLH 120 FCEVCGKGFT RDANLRMHMR AHGDEFKTAD ALASRARGET RGKTTRFSCP FEGCNRNKTH 180 KKFRPLKSVF CLRNHFKRSH CPKTLSCERC RKKSFAVLSD LKSHMKQCRG EATWKCSCGT 240 TFSRKDKLFG HVALFEGHLP MLEEEKETSA VAAAAGLPEG FFDGLDEFGF GSTESTSSPE 300 ETSPWGFPQM ETHF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0045ss01430.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017414287.1 | 0.0 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
Swissprot | Q9C8N5 | 9e-70 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | A0A0L9TJC4 | 0.0 | A0A0L9TJC4_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3QYN5 | 0.0 | A0A0S3QYN5_PHAAN; Uncharacterized protein | ||||
STRING | XP_007159664.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.3 | 2e-70 | C2H2 family protein |