PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0045ss00130.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 306aa    MW: 34442.5 Da    PI: 9.1863
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0045ss00130.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.32.7e-304695150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       krien++ rqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  Vang0045ss00130.1 46 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 95
                       79***********************************************8 PP
2K-box23.42.6e-09113148338
              K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhl 38 
                        +s+g s++ea+a+ +qqe+akL+ +i+nLq+ +R++
  Vang0045ss00130.1 113 SSNGGSASEANAQFYQQEAAKLRVQISNLQNHNRQV 148
                        45566699**********************999985 PP
3K-box77.43.8e-261632273498
              K-box  34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                        + R+++Ge L++++ k+L++Le++Lek++++iRskKnell+++ie++qk+e +l+++n+ Lr+k+
  Vang0045ss00130.1 163 NCRQMMGEALSDMDAKDLKNLETKLEKGISRIRSKKNELLFAEIEYMQKRETDLHNNNQLLRAKV 227
                        56************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.7263898IPR002100Transcription factor, MADS-box
SMARTSM004328.8E-423897IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-3239111IPR002100Transcription factor, MADS-box
CDDcd002659.25E-4539115No hitNo description
PRINTSPR004044.5E-324060IPR002100Transcription factor, MADS-box
PROSITE patternPS0035004094IPR002100Transcription factor, MADS-box
PfamPF003192.9E-264794IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-326075IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-327596IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.568124233IPR002487Transcription factor, K-box
PfamPF014866.4E-19163227IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
LNLLPCPEYN FSILFPHQLP VMAFPNQSMS SVSPERKMGR GKIEIKRIEN TTSRQVTFCK  60
RRNGLLKKAY ELSVLCDAEV ALIVFSNRGR LYEYANNSVK ASIERYKKAS SDSSNGGSAS  120
EANAQFYQQE AAKLRVQISN LQNHNRQVGY SLLLFKYGNN VLNCRQMMGE ALSDMDAKDL  180
KNLETKLEKG ISRIRSKKNE LLFAEIEYMQ KRETDLHNNN QLLRAKVCHM ALYGREIPNE  240
LSTTTSEDTI WQKGKGVSIM LTCCLEAQAT NQCNLSLILV ASSKSLDYNP IITSMLDKTT  300
CPSNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-1938110173Myocyte-specific enhancer factor 2B
1tqe_Q4e-1938110173Myocyte-specific enhancer factor 2B
1tqe_R4e-1938110173Myocyte-specific enhancer factor 2B
1tqe_S4e-1938110173Myocyte-specific enhancer factor 2B
6c9l_A4e-1938110173Myocyte-specific enhancer factor 2B
6c9l_B4e-1938110173Myocyte-specific enhancer factor 2B
6c9l_C4e-1938110173Myocyte-specific enhancer factor 2B
6c9l_D4e-1938110173Myocyte-specific enhancer factor 2B
6c9l_E4e-1938110173Myocyte-specific enhancer factor 2B
6c9l_F4e-1938110173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0045ss00130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0934340.0BT093434.1 Soybean clone JCVI-FLGm-14I9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507803.21e-130floral homeotic protein AGAMOUS-like isoform X1
SwissprotQ401681e-101AG_SOLLC; Floral homeotic protein AGAMOUS
TrEMBLA0A1S3UP041e-129A0A1S3UP04_VIGRR; floral homeotic protein AGAMOUS-like isoform X1
STRINGXP_007159503.11e-113(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.15e-84MIKC_MADS family protein
Publications ? help Back to Top
  1. Pan IL,McQuinn R,Giovannoni JJ,Irish VF
    Functional diversification of AGAMOUS lineage genes in regulating tomato flower and fruit development.
    J. Exp. Bot., 2010. 61(6): p. 1795-806
    [PMID:20335407]
  2. Gimenez E, et al.
    TOMATO AGAMOUS1 and ARLEQUIN/TOMATO AGAMOUS-LIKE1 MADS-box genes have redundant and divergent functions required for tomato reproductive development.
    Plant Mol. Biol., 2016. 91(4-5): p. 513-31
    [PMID:27125648]