PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0041ss00850.7 | ||||||||
Common Name | LR48_Vigan04g176800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 185aa MW: 21105.9 Da PI: 4.4769 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 44.6 | 4.7e-14 | 7 | 48 | 1 | 43 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykve 43 lppGfrFhPtdeelv++yL++k++++++ + +i+e+d+yk++ Vang0041ss00850.7 7 LPPGFRFHPTDEELVMHYLCRKCASQPIAV-PIIAEIDLYKYN 48 79*************************999.88*******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-15 | 3 | 48 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 9.802 | 7 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-7 | 8 | 61 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MASELQLPPG FRFHPTDEEL VMHYLCRKCA SQPIAVPIIA EIDLYKYNKK GTIEKLQPSS 60 DPVVTRKIES PEIEEKKPEI LKSGGVLPPA PPMTDYMYFD PSDSIPKLHT DSSCSEQVVS 120 PEFASEVQSE PKWNEWEKSL EFPFYMDTTL SNGFTQFTSN NNNTNNNNQM SPLQDMFMYW 180 PKPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-18 | 3 | 48 | 11 | 56 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0041ss00850.7 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017422406.1 | 7e-87 | PREDICTED: NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 4e-31 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A0L9UFA5 | 2e-85 | A0A0L9UFA5_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RD74 | 2e-85 | A0A0S3RD74_PHAAN; Uncharacterized protein | ||||
STRING | XP_007137423.1 | 2e-74 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 4e-25 | NAC family protein |