PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0041ss00850.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 152aa MW: 17378 Da PI: 9.7507 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.5 | 6.5e-50 | 7 | 123 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelv++yL++k++++++ + +i+e+d+yk++PwdLp ewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ Vang0041ss00850.6 7 LPPGFRFHPTDEELVMHYLCRKCASQPIAV-PIIAEIDLYKYDPWDLP--------EWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPI 89 79**************************99.88**************9........8*********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++vg+kk Lvfy g+apkg k++W+mheyrl Vang0041ss00850.6 90 GH--PKAVGIKKALVFYAGKAPKGDKSNWIMHEYRL 123 99..778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.03E-53 | 3 | 126 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.24 | 7 | 141 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-28 | 8 | 123 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MASELQLPPG FRFHPTDEEL VMHYLCRKCA SQPIAVPIIA EIDLYKYDPW DLPEWYFFSP 60 RDRKYPNGSR PNRAAGTGYW KATGADKPIG HPKAVGIKKA LVFYAGKAPK GDKSNWIMHE 120 YRLADVDRSV RKKNSLRVYA PYLHNPFPVQ E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-66 | 3 | 123 | 11 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0041ss00850.6 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-165 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014501798.1 | 3e-95 | NAC domain-containing protein 2 | ||||
Refseq | XP_017422406.1 | 4e-95 | PREDICTED: NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 2e-86 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A0L9UFA5 | 9e-94 | A0A0L9UFA5_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RD74 | 9e-94 | A0A0S3RD74_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A1S3U6Y9 | 8e-94 | A0A1S3U6Y9_VIGRR; NAC domain-containing protein 2 | ||||
STRING | XP_007137423.1 | 5e-93 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 8e-89 | NAC family protein |