PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0041ss00850.4 | ||||||||
Common Name | LR48_Vigan04g176800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 297aa MW: 33903.6 Da PI: 6.3705 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.8 | 3.5e-52 | 7 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelv++yL++k++++++ + +i+e+d+yk++PwdLp ++ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ Vang0041ss00850.4 7 LPPGFRFHPTDEELVMHYLCRKCASQPIAV-PIIAEIDLYKYDPWDLPGLASYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPI 97 79**************************99.88***************7777799************************************* PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++vg+kk Lvfy g+apkg k++W+mheyrl Vang0041ss00850.4 98 GH--PKAVGIKKALVFYAGKAPKGDKSNWIMHEYRL 131 99..778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.27E-61 | 4 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.017 | 7 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-27 | 8 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MASELQLPPG FRFHPTDEEL VMHYLCRKCA SQPIAVPIIA EIDLYKYDPW DLPGLASYGE 60 KEWYFFSPRD RKYPNGSRPN RAAGTGYWKA TGADKPIGHP KAVGIKKALV FYAGKAPKGD 120 KSNWIMHEYR LADVDRKTMK INLTVLILQL DDWVLCRIYN KKGTIEKLQP SSDPVVTRKI 180 ESPEIEEKKP EILKSGGVLP PAPPMTDYMY FDPSDSIPKL HTDSSCSEQV VSPEFASEVQ 240 SEPKWNEWEK SLEFPFYMDT TLSNGFTQFT SNNNNTNNNN QMSPLQDMFM YWPKPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-78 | 3 | 167 | 11 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0041ss00850.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017422406.1 | 0.0 | PREDICTED: NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 1e-139 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A0L9UFA5 | 0.0 | A0A0L9UFA5_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RD74 | 0.0 | A0A0S3RD74_PHAAN; Uncharacterized protein | ||||
STRING | XP_007137423.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-132 | NAC family protein |