PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang0041ss00690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 189aa MW: 21508.6 Da PI: 10.2113 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.2 | 8.6e-13 | 58 | 96 | 2 | 44 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAak 44 +y+GVr+ + +g+++AeIrdp+++g r++lg+f+ +A+ Vang0041ss00690.1 58 HYRGVRQQP-WGKFAAEIRDPNKRG--SRVWLGTFDI-AKAYN 96 8********.**********96655..**********.66654 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 7.5E-24 | 57 | 113 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.19E-24 | 57 | 112 | No hit | No description |
PROSITE profile | PS51032 | 17.029 | 58 | 112 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-15 | 58 | 114 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-7 | 58 | 95 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-26 | 58 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-10 | 59 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-10 | 94 | 114 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 189 aa Download sequence Send to blast |
LLHKKPQLNR KPSLQISLPR RSSGSNLGNP KKIEWIQFGK QVPNPPVVLL ENQSENKHYR 60 GVRQQPWGKF AAEIRDPNKR GSRVWLGTFD IAKAYNRVAF RLCGSKAILN FPLEASAVEE 120 VAEAEGEKKQ RREEEEVEEV KLVVKKEKKK QEVNCFREFS EVPKVANFQS YVKELASLLS 180 GADGHHEH* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-26 | 54 | 119 | 1 | 70 | ATERF1 |
3gcc_A | 1e-26 | 54 | 119 | 1 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang0041ss00690.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017422112.1 | 4e-62 | PREDICTED: ethylene-responsive transcription factor 5 | ||||
Swissprot | O80341 | 1e-40 | EF102_ARATH; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A0L9TQV8 | 8e-61 | A0A0L9TQV8_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R5G2 | 8e-61 | A0A0S3R5G2_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA17G15460.1 | 6e-49 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1085 | 34 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47230.1 | 2e-37 | ethylene responsive element binding factor 5 |
Publications ? help Back to Top | |||
---|---|---|---|
|