PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0041s00390.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WOX
Protein Properties Length: 151aa    MW: 16863.7 Da    PI: 9.7978
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0041s00390.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.3e-093402457
                      S--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox 24 ypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      +p ++e++++  +l    ++ +++V++WFqNr+ k k+
  Vang0041s00390.1  3 NPPRNEIRKIRVQLqeygQVGDANVFYWFQNRKSKSKN 40
                      79999******************************995 PP
2Wus_type_Homeobox63.83.4e-211412464
  Wus_type_Homeobox 24 lrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       +++P+++ei++i+ +L+eyG+++d+NVfyWFQNrk+++++k
   Vang0041s00390.1  1 MVNPPRNEIRKIRVQLQEYGQVGDANVFYWFQNRKSKSKNK 41
                       78*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.18E-5342IPR009057Homeodomain-like
PfamPF000467.3E-7339IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MVNPPRNEIR KIRVQLQEYG QVGDANVFYW FQNRKSKSKN KLHHIQNSKN HNTETQPNSI  60
SLSQIIPPST SSSSSDKSSS KELVHPNSIS LNQTYLQSHN YNNTALLPPA IESFSFPLDN  120
NGQGVIVNDT ITTHGFSIPQ FSNNIMQSQP *
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0041s00390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506392.12e-81WUSCHEL-related homeobox 9-like
RefseqXP_022640191.12e-81WUSCHEL-related homeobox 9-like
TrEMBLA0A0L9TLW34e-81A0A0L9TLW3_PHAAN; Uncharacterized protein
TrEMBLA0A1S3UK304e-80A0A1S3UK30_VIGRR; WUSCHEL-related homeobox 9-like
STRINGXP_007153888.17e-69(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38243361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.11e-22homeobox-3