PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0039ss01240.1

Common Name

LR48_Vigan05g072200

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 250aa MW: 27880.6 Da PI: 7.4469

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0039ss01240.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.7e-05	111	133	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C k Fs++ L H++ H Vang0039ss01240.1 111 FSCNFCQKEFSSSQALGGHQNAH 133 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.97E-7	108	138	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.4E-5	109	137	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.78	111	138	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	113	133	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MASSRDLEDY SSEASSTSQD IHKSNVEEGK KHEVTTMKEK GIKFEESKVS NSKTHMVLDF 60 VKFSNDQTLC GSKVELDFFN AKGSSSRANH TQGRDEHNKE EKPSSETNKT FSCNFCQKEF 120 SSSQALGGHQ NAHKQERALA KRRQGIDGGA FGNPHFLYYP YNPTHSFYGS YNRALGVRME 180 SMIHKPMAQR DHGNIRHSIP FLAESSANVT AKTNLTPLNH VEDNDNDRTK KEGTSNPSSS 240 DEIDLSLKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0039ss01240.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017423493.1	1e-176	PREDICTED: zinc finger protein 3-like
TrEMBL	A0A0L9UK34	1e-175	A0A0L9UK34_PHAAN; Uncharacterized protein
STRING	XP_007148790.1	1e-122	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1822	30	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	2e-22	C2H2 family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]