PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0039ss01220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NF-YC | ||||||||
Protein Properties | Length: 412aa MW: 45369.2 Da PI: 5.2455 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 57 | 4.2e-18 | 155 | 233 | 20 | 98 |
NF-YC 20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +l +arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl div r Vang0039ss01220.1 155 DLMVARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKYCVQSYNVFDFLRDIVSR 233 7889************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.0E-23 | 158 | 233 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.5E-17 | 158 | 218 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 2.37E-19 | 165 | 234 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MPVRPEATTV VDEGELDDDS FNRLTKVQKK KKEWRVELAA PVPSPPCSQC CATIGPSEPF 60 PHSCVTLQVP SIVKLYSSSW SFGYVAEFNT WRKSSASTLR VGVLGMWPSL ILGGRVLPEL 120 SLVENARGDL LMDACVETVE EIYDERFISC VAGLDLMVAR IKKIMQADED VGKIALAVPV 180 LVSKALELFL QDLCDRTYEI TLQRGAKTMN ALHLKYCVQS YNVFDFLRDI VSRVPDYGHG 240 HGHSEAGADD RALSKRRKAA GVEGNESDEE AKRSKMRELG HTSTTSRGRG RGKGRGRGRG 300 VRTVERDIIH QQVESEPCSS IQQISNDMPN TSLPIDNGVQ SKEYTKETSA AHEESAQSFR 360 NIDLNANLNE NGDKNASAAV EAPLPEPADM DIKHEEIPGW PCLDTLNNEN L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 5e-16 | 159 | 219 | 15 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 290 | 299 | RGKGRGRGRG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0039ss01220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017425617.1 | 1e-179 | PREDICTED: dr1-associated corepressor homolog isoform X1 | ||||
TrEMBL | A0A0L9UKN4 | 1e-173 | A0A0L9UKN4_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SIY7 | 1e-173 | A0A0S3SIY7_PHAAN; Uncharacterized protein | ||||
STRING | XP_007148787.1 | 1e-133 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1728 | 34 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 3e-63 | nuclear factor Y, subunit C11 |