PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0033ss01440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ZF-HD | ||||||||
Protein Properties | Length: 284aa MW: 30998 Da PI: 8.2416 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 108.5 | 3.6e-34 | 60 | 117 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 v+YkeClkNhAaslGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRr++ e Vang0033ss01440.1 60 VVTYKECLKNHAASLGGHALDGCGEFMPSSSTNpTDPRSLKCAACGCHRNFHRRDPRE 117 689**************************99999********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 7.0E-23 | 61 | 119 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 6.0E-29 | 61 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.6E-32 | 62 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.822 | 63 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-28 | 145 | 211 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.66E-18 | 145 | 211 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.4E-26 | 150 | 207 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MDLTSSCTHT IQTFDADTKT TPPVNPTNNT TPKSLSFTNG TPKRHPSTTA APPPQPPSMV 60 VTYKECLKNH AASLGGHALD GCGEFMPSSS TNPTDPRSLK CAACGCHRNF HRRDPREHTL 120 GTGYSTPSDE HPHHRGLTFS SVMLKSENPK KRYRTKFSKE QKEKMQNFSE KLGWRMQKGD 180 DGLVQQFCND IGVSRGVFKV WMHNNKNTFR RRLDQGENAN PNANANSPQS IGDHDDGNNT 240 SGGGGFDSDI NNPYNPSSNN NDIHMNEGDG CGNVHVSLNG LSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-21 | 151 | 208 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0033ss01440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014507232.1 | 1e-107 | zinc-finger homeodomain protein 11 | ||||
TrEMBL | A0A1S3UMK2 | 1e-106 | A0A1S3UMK2_VIGRR; zinc-finger homeodomain protein 11 | ||||
STRING | XP_007158652.1 | 2e-87 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1979 | 31 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 1e-56 | zinc finger homeodomain 1 |