PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0033ss01140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 426aa MW: 47816.6 Da PI: 8.9943 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.2 | 1.5e-16 | 144 | 195 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g Vang0033ss01140.1 144 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 195 89****99**********99966...3.6*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 11.285 | 27 | 109 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-4 | 70 | 115 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-7 | 75 | 111 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.9E-7 | 75 | 110 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.76E-26 | 144 | 205 | No hit | No description |
Pfam | PF00847 | 5.4E-12 | 144 | 195 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-18 | 144 | 205 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.953 | 145 | 203 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-26 | 145 | 209 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-18 | 145 | 204 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MELAPVKCEL SPRNHRLLVI DGSEVIAAKC VKRRRRGSSM SVLGGNEQQG EKLEEHKQLG 60 TATTVKRSSR FRGVSRHDLR AYNDEEAAAR AYDLAALKYW GTSTFTNFPV SDYEKEIEIM 120 KTVTKEEYLA SLRRRSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY LYLGTYSTQE 180 EAARAYDIAA IEYRGINAVT NFDLSTYIRW LRPGTQPIAS HDQKPGTDPQ PFATSNSMQT 240 RGNIEVSNSN MHSFSSAELD STKKQDFSKY MNPLSPCNKP SSPTALGLLL KSTVFRELMQ 300 RNLNSSSEEG EEVELKYPQE GNDGNGGTYY SDNTSNSYFC SSDINRLPNL ESPEESSLPI 360 NICLTWTCPT VMTLFLAQPT LVLPSRDRVS FTRNNFRTGS AVMAELVTYF TLSVFYHSPL 420 SKAYP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0033ss01140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017416306.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700 | ||||
TrEMBL | A0A0S3R1V1 | 0.0 | A0A0S3R1V1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007153839.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2198 | 32 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.2 | 2e-44 | ERF family protein |