PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0033ss00910.1
Common NameLR48_Vigan01g122600
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 295aa    MW: 33271.6 Da    PI: 5.9623
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0033ss00910.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.94.1e-09214271155
                        TT--SS--HHHHHHHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox   1 rrkRttftkeqleeLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        ++kR ++ k+  ++L +  +   k +yp++ ++  LAk++gL+++q+ +WF N+R ++
  Vang0033ss00910.1 214 KKKRDKLPKDARQVLLQWWNihyKWPYPTEGDKIALAKSTGLDQKQINNWFINQRKRH 271
                        56777777777777777666544689*****************************885 PP
2ELK24.94.7e-09191212122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELK+ L rK+++++gsLk EFs
  Vang0033ss00910.1 191 ELKDKLFRKFGSHIGSLKLEFS 212
                        9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.4E-2482126IPR005540KNOX1
PfamPF037902.0E-2384125IPR005540KNOX1
PROSITE profilePS512139.551191211IPR005539ELK domain
SMARTSM011883.9E-5191212IPR005539ELK domain
PfamPF037895.9E-6191212IPR005539ELK domain
PROSITE profilePS5007113.021211274IPR001356Homeobox domain
SuperFamilySSF466891.45E-19212285IPR009057Homeodomain-like
SMARTSM003891.5E-13213278IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.6E-28216275IPR009057Homeodomain-like
CDDcd000864.75E-13223275No hitNo description
PfamPF059202.8E-17231270IPR008422Homeobox KN domain
PROSITE patternPS000270249272IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEDQMYGMPS TAEYSEKALM TPESIFPAEY HGFLMSSGSR IPMFGSDELL SAAVAITAAS  60
GAEPYPNVAV VPEIQRHHDT SSLIKAKIAS HPHYPRLLQA YIDCQKVGAP PEIACLLEEI  120
RRENDVCKRD VVYTCVGADP ELDEFMVPSS FPFSFSLFPA HAHDGGVSSE EGFSAGDGDF  180
QDEQVHNEDR ELKDKLFRKF GSHIGSLKLE FSKKKKRDKL PKDARQVLLQ WWNIHYKWPY  240
PTEGDKIALA KSTGLDQKQI NNWFINQRKR HWKPSENMPF SMVDGLTGRF LTDE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212219KKKKRDKL
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0033ss00910.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-179AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017430359.10.0PREDICTED: homeobox protein knotted-1-like 6
RefseqXP_017430367.10.0PREDICTED: homeobox protein knotted-1-like 6
SwissprotQ84JS61e-111KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A0L9TMI70.0A0A0L9TMI7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R2590.0A0A0S3R259_PHAAN; Uncharacterized protein
STRINGXP_007153755.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-106KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]