PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0032ss01940.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YB
Protein Properties Length: 137aa    MW: 15021.9 Da    PI: 4.4368
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0032ss01940.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB32.61.9e-10592688
              NF-YB  6 rflPianvsrimkkvlP...anak..iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88
                       ++lP + v r++k  l    +++   +skd      e    fi ++++ a+d c++ kr+ ++++d++ al +  f ++v plk+ l+
  Vang0032ss01940.1  5 EELPRSIVRRVVKDKLSrcsEEGEisVSKDGLLAFSESGRIFIHYLSATANDICKESKRQIVSAEDVFKALEETEFSEFVRPLKASLE 92
                       6788899999999988622234541156788888899999*******************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.4E-24393IPR009072Histone-fold
PfamPF008082.4E-7675IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.56E-18792IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MAEAEELPRS IVRRVVKDKL SRCSEEGEIS VSKDGLLAFS ESGRIFIHYL SATANDICKE  60
SKRQIVSAED VFKALEETEF SEFVRPLKAS LEASTYNPGL LTSLFFAIVL KARLGSLLES  120
TRAEGSDKGE GEEDDE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0032ss01940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0904513e-90BT090451.1 Soybean clone JCVI-FLGm-4D13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017432662.16e-63PREDICTED: DNA polymerase epsilon subunit 3
TrEMBLA0A0L9V6J87e-61A0A0L9V6J8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SCC47e-61A0A0S3SCC4_PHAAN; Uncharacterized protein
STRINGXP_007132441.18e-59(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118633236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.13e-38nuclear factor Y, subunit B11