PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0032ss01930.2

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

G2-like

Protein Properties

Length: 409aa MW: 45587.4 Da PI: 7.6637

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0032ss01930.2	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	38.6	2.4e-12	42	67	1	26
G2-like 1 kprlrWtpeLHerFveaveqLGGsek 26 kprl+Wtp+LH+rF+eav+qLGG++ Vang0032ss01930.2 42 KPRLKWTPDLHARFIEAVQQLGGADS 67 79*********************986 PP
2	G2-like	50.7	4e-16	84	115	24	55
G2-like 24 sekAtPktilelmkvkgLtlehvkSHLQkYRl 55 s +AtPkt+++lm++ gLtl+h+kSHLQkYRl Vang0032ss01930.2 84 SAEATPKTVMKLMGISGLTLYHLKSHLQKYRL 115 568****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.1E-28	40	116	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.27E-12	41	116	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-7	42	67	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-7	44	114	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	1.5E-9	84	116	IPR006447	Myb domain, plants
Pfam	PF14379	1.6E-22	165	211	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
LQHQGKNIHS SSRMPIPSER HMFLHTGNGS GDSSLVLSTD AKPRLKWTPD LHARFIEAVQ 60 QLGGADSEYL KHIFFNDSKS KLFSAEATPK TVMKLMGISG LTLYHLKSHL QKYRLSKSLH 120 GQSNNVTHKI SINPGAATDE RLRENNGTHV NNLNLAPQSN NKDLHISEAL QMQIEVQRRL 180 NEQLEVQRLL QLRIEAQGKY LQAVLEKAQE TLGRQNLGVV GLEAAKLQLS DLVSKVSSQC 240 LNSAFLELKE LQGFSPHQTQ TNQPNDCSMD SCLTSCEVSQ KEQEIQNGGM SLRPFNVHTF 300 MERKELIEGP NLNNLPSTDL KWCDPVKNTF LTPLSRRSPS NLSMSIGLEG ETENGSTIRK 360 ESVKSVAEKV SQDYGLPSYF AAPNLDLTTE DKNNRSCKEL DLNGFSWN*

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

LQHQGKNIHS SSRMPIPSER HMFLHTGNGS GDSSLVLSTD AKPRLKWTPD LHARFIEAVQ  60
QLGGADSEYL KHIFFNDSKS KLFSAEATPK TVMKLMGISG LTLYHLKSHL QKYRLSKSLH  120
GQSNNVTHKI SINPGAATDE RLRENNGTHV NNLNLAPQSN NKDLHISEAL QMQIEVQRRL  180
NEQLEVQRLL QLRIEAQGKY LQAVLEKAQE TLGRQNLGVV GLEAAKLQLS DLVSKVSSQC  240
LNSAFLELKE LQGFSPHQTQ TNQPNDCSMD SCLTSCEVSQ KEQEIQNGGM SLRPFNVHTF  300
MERKELIEGP NLNNLPSTDL KWCDPVKNTF LTPLSRRSPS NLSMSIGLEG ETENGSTIRK  360
ESVKSVAEKV SQDYGLPSYF AAPNLDLTTE DKNNRSCKEL DLNGFSWN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-15	41	117	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-15	41	117	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-15	41	117	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-15	41	117	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-15	41	117	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-15	41	117	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-15	41	117	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-15	41	117	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0032ss01930.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027909406.1	0.0	myb-related protein 2-like
Swissprot	Q9SQQ9	1e-125	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A4D6LHJ9	0.0	A0A4D6LHJ9_VIGUN; Two-component response regulator ARR-B family
STRING	XP_007132437.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3852	31	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-114	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]