PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0032ss01920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bZIP | ||||||||
Protein Properties | Length: 442aa MW: 49579.2 Da PI: 8.0893 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.7 | 1.7e-10 | 157 | 197 | 4 | 44 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 k rr+++NReAA++sR+RKka++++Le +L+ ++ Vang0032ss01920.1 157 AKTLRRLAQNREAAKKSRLRKKAYVQQLESSRLKLTHLEQD 197 6889*************************877776666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 9.4E-7 | 154 | 231 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 7.4E-8 | 156 | 200 | No hit | No description |
PROSITE profile | PS50217 | 8.967 | 156 | 200 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 6.2E-8 | 157 | 199 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.34E-6 | 158 | 201 | No hit | No description |
CDD | cd14708 | 2.21E-22 | 158 | 209 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 161 | 176 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 9.6E-30 | 239 | 314 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MRGFQFQLQR RNQGSGFDFG ELEEAFAPLQ GIKIRSDEAK SCMFHCFCSS PFDEHSSFIH 60 RQAFSHTGNV PFMANEIPPN PKSTTLSHIP IFDQFISKDA HNKNRFNNKD AFCYPYHVHD 120 CTPPQEKLPN KGPFHSEMPP KNSRKGAGST SEKPLDAKTL RRLAQNREAA KKSRLRKKAY 180 VQQLESSRLK LTHLEQDLQR ARSQGVFMGC GGAGGSILSS GAAMFDLEYA RWLEDDHRHM 240 AELRTGLQAP LSDGELRVIV DGYLSHYDEV FRLKGVAAKT DVFHLINGMW TSPAERCFLW 300 IGGFKPSELI TMLIQQLEPL AEQQIMGICA LRHSSVQAED ALTQGLEQLQ QSLVDTIAGG 360 SVADGADNLR QQTLHQLCRL LTVRQAARCF VVIGEYYGRL RALSSLWASR PRESMISDDN 420 SCQTTTALQM VQPSQNHFSN F* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00131 | DAP | Transfer from AT1G08320 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0032ss01920.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 1e-150 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017432249.1 | 0.0 | PREDICTED: transcription factor TGA2 isoform X2 | ||||
Swissprot | Q93XM6 | 1e-164 | TGA9_ARATH; Transcription factor TGA9 | ||||
TrEMBL | A0A0L9V674 | 0.0 | A0A0L9V674_PHAAN; Uncharacterized protein | ||||
STRING | XP_007150072.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4555 | 33 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.3 | 1e-159 | bZIP family protein |
Publications ? help Back to Top | |||
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