PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0032ss01580.1 | ||||||||
Common Name | LR48_Vigan08g141100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 222aa MW: 24535.2 Da PI: 5.9528 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.9 | 1.9e-16 | 48 | 98 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +rWv+eIr+p++ + r+++g++ ++e+Aa+a++ a ++l+g Vang0032ss01580.1 48 PVYRGVRQRN-GNRWVCEIREPVK---KSRIWVGTYPSPEMAARAHDVAVLALNG 98 68*****999.9*********654...5*********************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.8E-11 | 48 | 98 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.574 | 49 | 106 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-23 | 49 | 112 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.32E-19 | 49 | 108 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-27 | 49 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-6 | 50 | 61 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.68E-26 | 50 | 108 | No hit | No description |
PRINTS | PR00367 | 2.2E-6 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MINMNMKNNE SPCSKSQSPP NSDPLCDSSN PSHKRKAGRK KFRETRHPVY RGVRQRNGNR 60 WVCEIREPVK KSRIWVGTYP SPEMAARAHD VAVLALNGIS AKFNFPDSVS LLPLAKSSSA 120 ADIREAAKTA TVDDTFTPNT SFSCSSHGNS SFEENGNAEE SFLNTSIHND ESETVFFDEE 180 ALYNMPGLLD SMAEGLLITP PSRALVWDHS DSEIDLTLWN N* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0032ss01580.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017432041.1 | 1e-160 | PREDICTED: dehydration-responsive element-binding protein 1B-like | ||||
Swissprot | A2WZI4 | 8e-52 | DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F | ||||
Swissprot | Q8S9Z5 | 8e-52 | DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | A0A0L9V7D3 | 1e-159 | A0A0L9V7D3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007132398.1 | 1e-121 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 3e-47 | C-repeat-binding factor 4 |
Publications ? help Back to Top | |||
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