PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0032ss00020.1
Common NameLR48_Vigan107s003000
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 743aa    MW: 83365.5 Da    PI: 5.607
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0032ss00020.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox521.2e-162072456
                       -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       R+++ +e + +Lee F+++++p++++r+++ ++lgL+ +qVk+WFqN++++ +
  Vang0032ss00020.1 20 RHRHDPEIIARLEEIFKECSHPDETRRRQIGEELGLDAKQVKFWFQNKKTQLR 72
                       889999*******************************************9876 PP
2START1363.9e-432584802206
                        HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
              START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                        +a+ a++el+k+ + +ep+W++s       +++d + ++f++s++      ++e +++s+vv m  ++lve +l++  +W   ++    kae
  Vang0032ss00020.1 258 IANNAMEELMKLLSMNEPFWFRSLvderFVLQRDCYQRIFQRSNSlngphARVESSKDSRVVKMSGTELVEMFLNSD-KWADLFPtivkKAE 348
                        6889********************98776789999999999999999******************************.88888877777*** PP

                        EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS
              START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165
                        t+ev++sg      galqlm+ae+  lsplvp R+f f+Ry++q +ag+w+i dvS+ds ++    s+v  +++lpSg+li++ ++g ++v 
  Vang0032ss00020.1 349 TIEVLESGslgnrnGALQLMNAEMHILSPLVPtREFSFLRYCKQIEAGVWTIGDVSIDSSTHEI--SNVSSSRRLPSGLLIQEIADGLCRVS 438
                        **************************************************************75..57777779****************** PP

                        EEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 166 wvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                        wvehv++++++  h l+r l+    a ga +wv +l+r ce+
  Vang0032ss00020.1 439 WVEHVEVDDKIQtHHLFRDLICGNNAYGAERWVLALERMCER 480
                        **********999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-14467IPR009057Homeodomain-like
SuperFamilySSF466896.27E-141274IPR009057Homeodomain-like
SMARTSM003894.5E-111478IPR001356Homeobox domain
CDDcd000867.41E-132075No hitNo description
PROSITE profilePS5007114.0742074IPR001356Homeobox domain
PfamPF000463.3E-142072IPR001356Homeobox domain
PROSITE profilePS5084840.8248483IPR002913START domain
SuperFamilySSF559611.65E-25251482No hitNo description
CDDcd088753.06E-93253479No hitNo description
SMARTSM002341.1E-30257480IPR002913START domain
PfamPF018529.5E-36258480IPR002913START domain
Gene3DG3DSA:3.30.530.208.1E-4305444IPR023393START-like domain
SuperFamilySSF559611.92E-10536733No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MSGSKLSDSD RDQQSIYHCR HRHDPEIIAR LEEIFKECSH PDETRRRQIG EELGLDAKQV  60
KFWFQNKKTQ LRTKSERLDI NALRLENERI QSENRIMTVN QDIFNHGHNQ EIPDLALDQH  120
VSSLTLTVTS PATVDPFRSQ DDPLLISCLE YNIPALVTAL DQNILSLAST SNQNNINLHV  180
VEKQSQGLNP CLNVPSVTPT LDQDNPHPGQ DISSILQDHT PSLDLDLDAI LHILNSDVVS  240
QPKTSENKDT ENARMLKIAN NAMEELMKLL SMNEPFWFRS LVDERFVLQR DCYQRIFQRS  300
NSLNGPHARV ESSKDSRVVK MSGTELVEMF LNSDKWADLF PTIVKKAETI EVLESGSLGN  360
RNGALQLMNA EMHILSPLVP TREFSFLRYC KQIEAGVWTI GDVSIDSSTH EISNVSSSRR  420
LPSGLLIQEI ADGLCRVSWV EHVEVDDKIQ THHLFRDLIC GNNAYGAERW VLALERMCER  480
IASASAETIP RSDVGGVIRS PDSRRNILRL TRRMVKSFCE SLCMQDNTSF PHLTRMNNGA  540
IRVAIRVNMN GPGEPKGMLL SAATSFWLPI SPQDIFDYLI DDRKRAKWDV LCSGNAGHEI  600
QRITTGSNPG NCVSIMRPFI PKENNIVILQ ESYVDALGSM MLYAPFDMKS LNYVMNGEDT  660
SLFPILPSGF TISRDAKPDV PEGQSGEVGK SEGSLVTLMF QILASSPSRM SMVDIEFVSN  720
VNALVTSTIE HIKDALNCSH SK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0032ss00020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158859.10.0hypothetical protein PHAVU_002G187900g, partial
TrEMBLA0A0L9T5A40.0A0A0L9T5A4_PHAAN; Uncharacterized protein
STRINGXP_007158859.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1737556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17920.11e-131homeodomain GLABROUS 12
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]