PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0030ss00230.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 914aa    MW: 100682 Da    PI: 6.4291
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0030ss00230.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-1892150357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                        k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Vang0030ss00230.2  92 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 150
                        5679*****************************************************97 PP
2START177.57.8e-562364442205
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g++
  Vang0030ss00230.2 236 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVLPTAngGTI 326
                        7899******************************************************.8888888888****************9999*** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ +++++
  Vang0030ss00230.2 327 ELLYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLKNTQNGPTmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPE 418
                        **********************************************9998899*************************************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXXXX CS
              START 180 llrslvksglaegaktwvatlqrqce 205
                        +lr+l++s+++ ++kt++ +l+++++
  Vang0030ss00230.2 419 VLRPLYESSTVLAQKTTMVALRQLRQ 444
                        *******************9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.40287151IPR001356Homeobox domain
SMARTSM003891.2E-1589155IPR001356Homeobox domain
SuperFamilySSF466895.56E-1789155IPR009057Homeodomain-like
CDDcd000861.51E-1692152No hitNo description
PfamPF000466.5E-1693150IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.9E-1894150IPR009057Homeodomain-like
CDDcd146862.18E-6144183No hitNo description
PROSITE profilePS5084825.192226441IPR002913START domain
CDDcd088753.91E-79230445No hitNo description
Gene3DG3DSA:3.30.530.204.9E-23233441IPR023393START-like domain
SMARTSM002341.8E-41235445IPR002913START domain
SuperFamilySSF559612.61E-37235424No hitNo description
PfamPF018522.9E-53236444IPR002913START domain
PfamPF086701.5E-51770912IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 914 aa     Download sequence    Send to blast
MICERRDLRS KAEVSEEPRE KGEFAESVCV GLPRMKIGEA ESFGFVLRLR EITQQVLGVG  60
GNQIVAVLSM RFVFEGMAMS CKDGKPGLDN GKYVRYTPEQ VEALERLYHD CPKPSSIRRQ  120
QLIRECPILS NIEPKQIKVW FQNRRCREKQ RKEASRLQAV NRKLTAMNKL LMEENDRLQK  180
QVSHLVYENG YFRQHTQNTA LPTKDTSCES AVTSGQRSLT AQHPPRDASP AGLMSIAEET  240
LAEFLSKATG TAVEWVQMPG MKPGPDSIGI VAISHGCTGV AARACGLVGL EPTRVAEILK  300
DRPSWFRDCR AVDVLNVLPT ANGGTIELLY MQLYAPTTLA PARDFWLLRY TSVLEDGSLV  360
VCERSLKNTQ NGPTMPPVQH FVRAEMLPSG YLIRPCEGGG SIIHIVDHMD LEPWSVPEVL  420
RPLYESSTVL AQKTTMVALR QLRQISHEVS QSNVTGWGRR PAALRALGQR LSRGFNEAIN  480
GFTDEGWSMI GNDGVDDVTV LVNSSPDKLM GLNLSFANGF PSISNAVLCA KASMLLQNVP  540
PAILLRFLRE HRSEWADNNM DAYSAAAVKV GPCGLPGTRV GNYGGQVILP LAHTIEHEEF  600
LEVIKLEGIA HSPEDAIMPR EVFLLQLCSG MDENAVGTCA ELIFAPIDAS FADDAPLLPS  660
GFRIIPLDSA KEASNPNRTL DLASALDIGP TGNRASNDYS GNSGSMRSVM TIAFEFAFES  720
HMQDHVASMA RQSVRSIISS VQRVALALSP SHLSSQAGLR TPLGTPEAQT LARWICNSYR  780
CYLGVELLKS NNEGNESLLK SLWHHSDAIL CCTLKALPVF TFANQAGLDM LETTLVALQD  840
ITLEKIFDDH GRKILCSEFP QIIQQGFACL QGGICLSSMG RPISYERVVA WKVLNEEENA  900
HCICFMFMNW SFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0030ss00230.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017425270.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A4D6N5B10.0A0A4D6N5B1_VIGUN; Homeobox-leucine zipper protein
STRINGXP_007150614.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]