PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0030ss00230.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 931aa    MW: 102557 Da    PI: 6.4287
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0030ss00230.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-18109167357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                        k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Vang0030ss00230.1 109 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 167
                        5679*****************************************************97 PP
2START177.58.1e-562534612205
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g++
  Vang0030ss00230.1 253 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVLPTAngGTI 343
                        7899******************************************************.8888888888****************9999*** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ +++++
  Vang0030ss00230.1 344 ELLYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLKNTQNGPTmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPE 435
                        **********************************************9998899*************************************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXXXX CS
              START 180 llrslvksglaegaktwvatlqrqce 205
                        +lr+l++s+++ ++kt++ +l+++++
  Vang0030ss00230.1 436 VLRPLYESSTVLAQKTTMVALRQLRQ 461
                        *******************9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.402104168IPR001356Homeobox domain
SuperFamilySSF466895.56E-17106172IPR009057Homeodomain-like
SMARTSM003891.2E-15106172IPR001356Homeobox domain
CDDcd000861.55E-16109169No hitNo description
PfamPF000466.6E-16110167IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-18111167IPR009057Homeodomain-like
CDDcd146861.75E-6161200No hitNo description
PROSITE profilePS5084825.192243458IPR002913START domain
CDDcd088754.80E-79247462No hitNo description
Gene3DG3DSA:3.30.530.205.0E-23250458IPR023393START-like domain
SuperFamilySSF559612.75E-37252441No hitNo description
SMARTSM002341.8E-41252462IPR002913START domain
PfamPF018522.9E-53253461IPR002913START domain
PfamPF086701.6E-51787929IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 931 aa     Download sequence    Send to blast
MICERRDLRS KAEVSEEPRE KGEFAESVCV GLPRMKIGEA ESFGFVLRLR EITQQVLGVG  60
GNQIVAVLSM RFVFEGLISK DLMFYGFVLS CVGMAMSCKD GKPGLDNGKY VRYTPEQVEA  120
LERLYHDCPK PSSIRRQQLI RECPILSNIE PKQIKVWFQN RRCREKQRKE ASRLQAVNRK  180
LTAMNKLLME ENDRLQKQVS HLVYENGYFR QHTQNTALPT KDTSCESAVT SGQRSLTAQH  240
PPRDASPAGL MSIAEETLAE FLSKATGTAV EWVQMPGMKP GPDSIGIVAI SHGCTGVAAR  300
ACGLVGLEPT RVAEILKDRP SWFRDCRAVD VLNVLPTANG GTIELLYMQL YAPTTLAPAR  360
DFWLLRYTSV LEDGSLVVCE RSLKNTQNGP TMPPVQHFVR AEMLPSGYLI RPCEGGGSII  420
HIVDHMDLEP WSVPEVLRPL YESSTVLAQK TTMVALRQLR QISHEVSQSN VTGWGRRPAA  480
LRALGQRLSR GFNEAINGFT DEGWSMIGND GVDDVTVLVN SSPDKLMGLN LSFANGFPSI  540
SNAVLCAKAS MLLQNVPPAI LLRFLREHRS EWADNNMDAY SAAAVKVGPC GLPGTRVGNY  600
GGQVILPLAH TIEHEEFLEV IKLEGIAHSP EDAIMPREVF LLQLCSGMDE NAVGTCAELI  660
FAPIDASFAD DAPLLPSGFR IIPLDSAKEA SNPNRTLDLA SALDIGPTGN RASNDYSGNS  720
GSMRSVMTIA FEFAFESHMQ DHVASMARQS VRSIISSVQR VALALSPSHL SSQAGLRTPL  780
GTPEAQTLAR WICNSYRCYL GVELLKSNNE GNESLLKSLW HHSDAILCCT LKALPVFTFA  840
NQAGLDMLET TLVALQDITL EKIFDDHGRK ILCSEFPQII QQGFACLQGG ICLSSMGRPI  900
SYERVVAWKV LNEEENAHCI CFMFMNWSFV *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0030ss00230.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017425270.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A4D6N5B10.0A0A4D6N5B1_VIGUN; Homeobox-leucine zipper protein
STRINGXP_007150614.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]